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Lsi05G009790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G009790
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA binding (RRM/RBD/RNP motifs) family protein
Genome locationchr05:17099686..17100559
RNA-Seq ExpressionLsi05G009790
SyntenyLsi05G009790
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0030014 - CCR4-NOT complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsIPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034261 - CNOT4, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR039780 - CCR4-NOT transcription complex subunit 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463873.1 PREDICTED: uncharacterized protein LOC103501902 isoform X1 [Cucumis melo]1.4e-5695.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

XP_022146241.1 uncharacterized protein LOC111015505 isoform X1 [Momordica charantia]1.4e-5695.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

XP_022146247.1 uncharacterized protein LOC111015505 isoform X2 [Momordica charantia]1.4e-5695.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

XP_038901784.1 uncharacterized protein LOC120088502 isoform X2 [Benincasa hispida]1.4e-5695.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

XP_038901785.1 uncharacterized protein LOC120088502 isoform X3 [Benincasa hispida]1.4e-5695.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

TrEMBL top hitse value%identityAlignment
A0A1S3CK71 uncharacterized protein LOC103501902 isoform X26.7e-5795.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

A0A1S3CK79 uncharacterized protein LOC103501902 isoform X16.7e-5795.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

A0A5A7SZD0 Uncharacterized protein6.7e-5795.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

A0A6J1CXK4 uncharacterized protein LOC111015505 isoform X16.7e-5795.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

A0A6J1CZ27 uncharacterized protein LOC111015505 isoform X26.7e-5795.54Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQRREYFGQYGKVLKVSMSRT T VIQQFPNNTCSVYITYSKEEE VRCIQNVHQF LEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

SwissProt top hitse value%identityAlignment
O95628 CCR4-NOT transcription complex subunit 41.8e-2244.86Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        E+L+R EYFG++GK+ KV ++ +T+    Q P  + S Y+TY + E+ +R IQ V+   ++G+ L+A  GTTKYC  +L+N+ C  PDC+YLHE+G +  
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEI
        SFTK+E+
Subjt:  SFTKDEI

P34909 General negative regulator of transcription subunit 44.3e-2140.52Show/hide
Query:  LQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCS-----------VYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLY
        L+  +YFGQYGK+ K+ ++R T        NNT S           VYIT+  +++  RCI  V   +++G+ ++A +GTTKYC ++LR +PC NP+C++
Subjt:  LQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCS-----------VYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLY

Query:  LHEVGSQEDSFTKDEI
        LHE G + DSF K E+
Subjt:  LHEVGSQEDSFTKDEI

Q09818 Putative general negative regulator of transcription C16C9.04c8.8e-2241.82Show/hide
Query:  MELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQE
        + +L+  EYFGQYGK++K+++++   +      N    VYITY ++E+  R I  +     +G+ LRA +GTTKYC ++LRN  C NP C+YLHE G + 
Subjt:  MELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQE

Query:  DSFTKDEIIS
        DS+TK+++ S
Subjt:  DSFTKDEIIS

Q8BT14 CCR4-NOT transcription complex subunit 41.8e-2244.86Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        E+L+R EYFG++GK+ KV ++ +T+    Q P  + S Y+TY + E+ +R IQ V+   ++G+ L+A  GTTKYC  +L+N+ C  PDC+YLHE+G +  
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEI
        SFTK+E+
Subjt:  SFTKDEI

Arabidopsis top hitse value%identityAlignment
AT2G28540.1 RNA binding (RRM/RBD/RNP motifs) family protein1.5e-4872.97Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        ++ QRREYFGQYGKV+KV+MSRT    +QQFPNNTCSVYITYSKEEE +RCI++VH F L+G+ L+ACFGT KYCHAWLRN+PC+N +CLYLHE+G+QED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAY
        SF+KDE ISA+
Subjt:  SFTKDEIISAY

AT2G28540.2 RNA binding (RRM/RBD/RNP motifs) family protein1.5e-4872.97Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        ++ QRREYFGQYGKV+KV+MSRT    +QQFPNNTCSVYITYSKEEE +RCI++VH F L+G+ L+ACFGT KYCHAWLRN+PC+N +CLYLHE+G+QED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAY
        SF+KDE ISA+
Subjt:  SFTKDEIISAY

AT3G45630.1 RNA binding (RRM/RBD/RNP motifs) family protein2.0e-5383.93Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQR+EYFGQYGKVLKVSMSRT T +IQQFPNNTCSVYITY KEEE +RCIQ+VH F L+GK L+ACFGTTKYCHAWLRNV C N DCLYLHEVGSQED
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISA+T
Subjt:  SFTKDEIISAYT

AT5G60170.1 RNA binding (RRM/RBD/RNP motifs) family protein1.4e-5485.71Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQ +EYFGQYGKVLKVSMSRT + VIQQFPNNTCSVYITY KEEE VRCIQ VH F L+GKPL+ACFGTTKYCHAWLRNV C NPDCLYLHEVGSQ+D
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT

AT5G60170.2 RNA binding (RRM/RBD/RNP motifs) family protein1.4e-5485.71Show/hide
Query:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED
        +LLQ +EYFGQYGKVLKVSMSRT + VIQQFPNNTCSVYITY KEEE VRCIQ VH F L+GKPL+ACFGTTKYCHAWLRNV C NPDCLYLHEVGSQ+D
Subjt:  ELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQED

Query:  SFTKDEIISAYT
        SFTKDEIISAYT
Subjt:  SFTKDEIISAYT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTCTAAAAGTGTCGATGTCCCGTACAACAACTAGAGTCATTCAACAATTTCCTAATAATACGTG
TAGTGTATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAATTTTTCTTGGAGGGCAAACCATTAAGGGCATGCTTTGGAACGACAA
AGTATTGTCATGCTTGGTTGAGGAATGTGCCCTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCA
GCATACACA
mRNA sequenceShow/hide mRNA sequence
ATGGAACTTCTTCAGCGTAGAGAATACTTTGGTCAGTATGGGAAAGTTCTAAAAGTGTCGATGTCCCGTACAACAACTAGAGTCATTCAACAATTTCCTAATAATACGTG
TAGTGTATATATTACATACTCAAAAGAGGAGGAAGTTGTTCGATGTATCCAAAATGTACATCAATTTTTCTTGGAGGGCAAACCATTAAGGGCATGCTTTGGAACGACAA
AGTATTGTCATGCTTGGTTGAGGAATGTGCCCTGCACCAACCCTGATTGTTTGTATTTACACGAGGTTGGTTCTCAAGAAGATAGTTTCACAAAAGATGAAATCATTTCA
GCATACACA
Protein sequenceShow/hide protein sequence
MELLQRREYFGQYGKVLKVSMSRTTTRVIQQFPNNTCSVYITYSKEEEVVRCIQNVHQFFLEGKPLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGSQEDSFTKDEIIS
AYT