; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G009890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G009890
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionMitochondrial transcription termination factor family protein
Genome locationchr05:17293876..17297719
RNA-Seq ExpressionLsi05G009890
SyntenyLsi05G009890
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582228.1 Transcription termination factor MTERF15, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2446.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S +KIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+QAL SKGLI K+V  +  +F S E +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

XP_022933338.1 uncharacterized protein LOC111440613 isoform X1 [Cucurbita moschata]1.3e-2446.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

XP_022933339.1 uncharacterized protein LOC111440613 isoform X2 [Cucurbita moschata]1.3e-2446.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

XP_022956115.1 transcription termination factor MTERF4, chloroplastic-like isoform X1 [Cucurbita moschata]5.7e-2546.76Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+QAL SKGLI K+V  +  +F S E +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

XP_022956116.1 uncharacterized protein LOC111457902 isoform X2 [Cucurbita moschata]1.3e-2446.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

TrEMBL top hitse value%identityAlignment
A0A2N9J184 Uncharacterized protein1.0e-2443.48Show/hide
Query:  KFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFSV
        +FK  V+ VK MG +P  + FV  V  +  + K +W+++  AYK+WGL+E+E+  AF K+   +++S DKI  +MDFFVNK G +AS+++  PDLIN+S+
Subjt:  KFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFSV

Query:  EGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        E R +PR  V + L SKGL+ KN I +  +F  ++K F
Subjt:  EGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

A0A6J1EZH0 uncharacterized protein LOC111440613 isoform X26.1e-2546.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

A0A6J1F4G8 uncharacterized protein LOC111440613 isoform X16.1e-2546.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

A0A6J1GVP2 uncharacterized protein LOC111457902 isoform X26.1e-2546.04Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  + FV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+Q L SKGLI K+V  +  +F SAE +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

A0A6J1GWY1 transcription termination factor MTERF4, chloroplastic-like isoform X12.8e-2546.76Show/hide
Query:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        ++FK  V+ VK MG +P  +KFV  V  +  + K  W+KK E YKKWG  E+E+  AF+++   M++S DKIN +MDFFVNK GC+ S +   P LI+ S
Subjt:  MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
        ++ R+VPR  V+QAL SKGLI K+V  +  +F S E +F
Subjt:  VEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G61980.1 Mitochondrial transcription termination factor family protein1.8e-0825.43Show/hide
Query:  KFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKK---------------------------NITIMLS-------
        KF+ ++  V  MG DP+  KFV  +  V R+     + K  AYK+ G   + V+  FK+                             ++++        
Subjt:  KFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKK---------------------------NITIMLS-------

Query:  -SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF
         S + +    +F V K       L+  P ++ +S+E R VPR  V QAL SKGLI   +  I  +F   ++ F
Subjt:  -SVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNVVFQALKSKGLITKNVIRIGHIFTSAEKKF

AT3G21465.1 unknown protein1.4e-1632.99Show/hide
Query:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAGGLL----LDGKAEEAAK-------IIIDILRQ--FLPMVD
        L +YA  H D KLM E++ L+++N L L P TA+++ RIC + +NW LL +YS KF  AG  L     D   E AAK         +D LR   +     
Subjt:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAGGLL----LDGKAEEAAK-------IIIDILRQ--FLPMVD

Query:  DSRFMEDLSVKLEDWPNDLLFYFREQGEHWPEK----LNNEIQGLVKQWPAEFIKLQKRAKKREKYAAILKSSIPEMIHYLSTNALELQLNLDHLKK
           F       LE  P +     +   + +P++    L  E + LV +W  + IK Q    K++  AA LKS IP M++ L  + L ++++L+ L K
Subjt:  DSRFMEDLSVKLEDWPNDLLFYFREQGEHWPEK----LNNEIQGLVKQWPAEFIKLQKRAKKREKYAAILKSSIPEMIHYLSTNALELQLNLDHLKK

AT3G21465.2 unknown protein1.1e-1048.33Show/hide
Query:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAG
        L +YA  H D KLM E++ L+++N L L P TA+++ RIC + +NW LL +YS KF  AG
Subjt:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAG

AT4G15640.1 unknown protein6.7e-1629.44Show/hide
Query:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAGGLLLD-------------GKAEEAAKIIIDILRQFLPMVD
        L +YA +H + +LM E++ L++ N L L P TA+++ RIC + + W LL +YS KF  AG  L               G  E   K+       +     
Subjt:  LWNYAKDHNDVKLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAGGLLLD-------------GKAEEAAKIIIDILRQFLPMVD

Query:  DSRFMEDLSVKLEDWPNDLLFYFREQGEHWPEK----LNNEIQGLVKQWPAEFIKLQKRAKKREKYAAILKSSIPEMIHYLSTNALELQLNLDHLKK
         + F       LE  P +     +   + +P++    ++ E + LV +WP + IK Q    K+   AA LKS IP M++ L ++ L++ ++LD L K
Subjt:  DSRFMEDLSVKLEDWPNDLLFYFREQGEHWPEK----LNNEIQGLVKQWPAEFIKLQKRAKKREKYAAILKSSIPEMIHYLSTNALELQLNLDHLKK

AT5G07900.1 Mitochondrial transcription termination factor family protein3.7e-1433.06Show/hide
Query:  KFKATVDIVKNMGMDPNMMKFVNTVRCVM-RVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS
        +F+A     + MG +P    FV  +  +  +  K +W K  E Y++WG +ED++  AFKK+   M+ S  KIN  M++FVN+       +   P ++ FS
Subjt:  KFKATVDIVKNMGMDPNMMKFVNTVRCVM-RVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFS

Query:  VEGRLVPRNVVFQALKSKGLITKN
        +E R++PR  V + L S GL+ ++
Subjt:  VEGRLVPRNVVFQALKSKGLITKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTAAAGCTACAGTAGATATTGTTAAGAATATGGGGATGGATCCGAATATGATGAAGTTTGTGAATACTGTTCGATGTGTGATGAGGGTGAGGAAAGATCTTTG
GAAAAAGAAGAATGAAGCATACAAAAAATGGGGGTTGACGGAGGATGAAGTGTACGGGGCATTCAAAAAAAATATCACGATAATGCTATCATCGGTCGACAAAATTAATT
CCATGATGGATTTCTTTGTCAATAAGGCAGGATGTCAAGCTTCCATTCTCCTAGACTTCCCTGATTTGATAAACTTCAGTGTGGAGGGAAGACTAGTTCCGAGAAATGTC
GTTTTTCAAGCTTTGAAGTCTAAGGGCCTCATTACAAAAAATGTAATTAGAATTGGACACATTTTTACATCAGCTGAAAAGAAATTCAAAGGAACTGATAAAGTAGAATC
AGAGGGCCGTTGTTCCATAATCGCACAAAATAAACATCCTAACAATCTTCTTGTACCACCTCCAAGGCCATCAATAATTTCGAGTTATCCTAATTACTATCCAGATGGTG
ACGATGCAGAATCAATTTATAATCATCTATCTAAATTCATTCCTTTTGCGGATGATGACACGCCACCCTCTGATTGGTTGTGGAATTATGCTAAGGATCATAATGACGTC
AAACTGATGGTTGAAATTGTCCATCTTATACAAGTCAACCAATTGACATTACTCCCCGATACAGCAGAAATCATTCTCAGGATTTGTGATAATGTGAATAATTGGCAATT
GCTTAATGAGTACTCATCAAAATTTATCTCGGCTGGGGGTCTACTATTAGATGGAAAGGCCGAGGAAGCCGCTAAAATCATTATAGACATCTTACGTCAGTTCTTGCCGA
TGGTAGATGATTCGCGGTTTATGGAAGATCTGTCAGTGAAGTTGGAGGATTGGCCCAACGATCTTTTGTTTTACTTTCGAGAGCAAGGCGAGCATTGGCCTGAAAAACTT
AATAATGAAATCCAAGGTTTGGTCAAACAGTGGCCAGCCGAATTTATAAAGCTTCAAAAACGAGCTAAGAAAAGAGAGAAATATGCTGCAATTTTAAAATCTTCTATTCC
TGAGATGATACACTATCTATCAACAAATGCCCTCGAGCTGCAACTAAATTTGGACCATCTAAAGAAGCTTGGCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTAAAGCTACAGTAGATATTGTTAAGAATATGGGGATGGATCCGAATATGATGAAGTTTGTGAATACTGTTCGATGTGTGATGAGGGTGAGGAAAGATCTTTG
GAAAAAGAAGAATGAAGCATACAAAAAATGGGGGTTGACGGAGGATGAAGTGTACGGGGCATTCAAAAAAAATATCACGATAATGCTATCATCGGTCGACAAAATTAATT
CCATGATGGATTTCTTTGTCAATAAGGCAGGATGTCAAGCTTCCATTCTCCTAGACTTCCCTGATTTGATAAACTTCAGTGTGGAGGGAAGACTAGTTCCGAGAAATGTC
GTTTTTCAAGCTTTGAAGTCTAAGGGCCTCATTACAAAAAATGTAATTAGAATTGGACACATTTTTACATCAGCTGAAAAGAAATTCAAAGGAACTGATAAAGTAGAATC
AGAGGGCCGTTGTTCCATAATCGCACAAAATAAACATCCTAACAATCTTCTTGTACCACCTCCAAGGCCATCAATAATTTCGAGTTATCCTAATTACTATCCAGATGGTG
ACGATGCAGAATCAATTTATAATCATCTATCTAAATTCATTCCTTTTGCGGATGATGACACGCCACCCTCTGATTGGTTGTGGAATTATGCTAAGGATCATAATGACGTC
AAACTGATGGTTGAAATTGTCCATCTTATACAAGTCAACCAATTGACATTACTCCCCGATACAGCAGAAATCATTCTCAGGATTTGTGATAATGTGAATAATTGGCAATT
GCTTAATGAGTACTCATCAAAATTTATCTCGGCTGGGGGTCTACTATTAGATGGAAAGGCCGAGGAAGCCGCTAAAATCATTATAGACATCTTACGTCAGTTCTTGCCGA
TGGTAGATGATTCGCGGTTTATGGAAGATCTGTCAGTGAAGTTGGAGGATTGGCCCAACGATCTTTTGTTTTACTTTCGAGAGCAAGGCGAGCATTGGCCTGAAAAACTT
AATAATGAAATCCAAGGTTTGGTCAAACAGTGGCCAGCCGAATTTATAAAGCTTCAAAAACGAGCTAAGAAAAGAGAGAAATATGCTGCAATTTTAAAATCTTCTATTCC
TGAGATGATACACTATCTATCAACAAATGCCCTCGAGCTGCAACTAAATTTGGACCATCTAAAGAAGCTTGGCAAATAG
Protein sequenceShow/hide protein sequence
MKFKATVDIVKNMGMDPNMMKFVNTVRCVMRVRKDLWKKKNEAYKKWGLTEDEVYGAFKKNITIMLSSVDKINSMMDFFVNKAGCQASILLDFPDLINFSVEGRLVPRNV
VFQALKSKGLITKNVIRIGHIFTSAEKKFKGTDKVESEGRCSIIAQNKHPNNLLVPPPRPSIISSYPNYYPDGDDAESIYNHLSKFIPFADDDTPPSDWLWNYAKDHNDV
KLMVEIVHLIQVNQLTLLPDTAEIILRICDNVNNWQLLNEYSSKFISAGGLLLDGKAEEAAKIIIDILRQFLPMVDDSRFMEDLSVKLEDWPNDLLFYFREQGEHWPEKL
NNEIQGLVKQWPAEFIKLQKRAKKREKYAAILKSSIPEMIHYLSTNALELQLNLDHLKKLGK