; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G010440 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G010440
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
Genome locationchr05:17964488..17964889
RNA-Seq ExpressionLsi05G010440
SyntenyLsi05G010440
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151998.1 heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus]4.6e-3598.67Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

XP_008447387.1 PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo]4.6e-3598.67Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

XP_022155643.1 heterogeneous nuclear ribonucleoprotein 1-like [Momordica charantia]1.3e-3497.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFG+VIQAVIMRDKTTGRPRGFGFVVFSDPS LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

XP_022963595.1 heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata]3.9e-3497.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLR+YFSQFGEV QAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

XP_038887503.1 heterogeneous nuclear ribonucleoprotein 1-like [Benincasa hispida]2.1e-35100Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

TrEMBL top hitse value%identityAlignment
A0A0A0L8W1 Uncharacterized protein2.2e-3598.67Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

A0A1S3BHX8 heterogeneous nuclear ribonucleoprotein 1-like2.2e-3598.67Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPS+LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

A0A6J1DNH8 heterogeneous nuclear ribonucleoprotein 1-like6.5e-3597.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLRDYFSQFG+VIQAVIMRDKTTGRPRGFGFVVFSDPS LDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

A0A6J1HIF4 heterogeneous nuclear ribonucleoprotein 1-like1.9e-3497.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLR+YFSQFGEV QAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

A0A6J1HUK4 heterogeneous nuclear ribonucleoprotein 1-like4.2e-3496Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSDEGKLFIGGIAWDTSEEKLR+YFS+FGEV QAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

SwissProt top hitse value%identityAlignment
O94432 Uncharacterized RNA-binding protein C660.157.4e-2051.43Show/hide
Query:  DEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGR
        ++GK+FIGG+ W+T+++ LRDYF QFGEV+   +MRD TTGR RGFGF+ F +P  +++V+  +H +DG+
Subjt:  DEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGR

Q8W034 Heterogeneous nuclear ribonucleoprotein 11.8e-2972Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSD+GKLF+GGI+W+T E+KLR++F+ +GEV QA++MRDK TGRPRGFGFV+FSDPSVLD+VLQ+KH+ID R+V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

Q96EP5 DAZ-associated protein 11.3e-1957.75Show/hide
Query:  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRQV
        GKLF+GG+ W T++E LR YFSQ+GEV+  VIM+DKTT + RGFGFV F DP+ +  VL  + HT+DGR +
Subjt:  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRQV

Q9JII5 DAZ-associated protein 11.3e-1957.75Show/hide
Query:  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRQV
        GKLF+GG+ W T++E LR YFSQ+GEV+  VIM+DKTT + RGFGFV F DP+ +  VL  + HT+DGR +
Subjt:  GKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDK-HTIDGRQV

Q9VVE5 RNA-binding protein Musashi homolog Rbp64.3e-2055.41Show/hide
Query:  SDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-QDKHTIDGRQV
        +D GK+FIGG++W TS E LRDYF ++G++ +A++M+D TT R RGFGFV FSDP+ +D+VL Q  H +DG++V
Subjt:  SDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVL-QDKHTIDGRQV

Arabidopsis top hitse value%identityAlignment
AT2G33410.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.8e-2972Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        M+SD+GKLFIGGI+WDT E  LR+YFS FGEV+Q  +MR+K TGRPRGFGFV FSDP+V+D+VLQDKH ID R V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

AT4G14300.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-3072Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        MDSD+GKLF+GGI+W+T E+KLR++F+ +GEV QA++MRDK TGRPRGFGFV+FSDPSVLD+VLQ+KH+ID R+V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

AT5G55550.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-2869.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        M+SD GKLFIGGI+WDT EE+LRDYFS +G+V++AVIMRD+ TGR RGFGF+VF+DP V ++V+ DKH IDGR V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

AT5G55550.2 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-2869.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        M+SD GKLFIGGI+WDT EE+LRDYFS +G+V++AVIMRD+ TGR RGFGF+VF+DP V ++V+ DKH IDGR V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV

AT5G55550.3 RNA-binding (RRM/RBD/RNP motifs) family protein2.0e-2869.33Show/hide
Query:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV
        M+SD GKLFIGGI+WDT EE+LRDYFS +G+V++AVIMRD+ TGR RGFGF+VF+DP V ++V+ DKH IDGR V
Subjt:  MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCGACGAGGGGAAGCTTTTCATTGGAGGAATAGCTTGGGACACCTCCGAGGAGAAGCTTAGAGACTATTTCTCCCAATTCGGTGAAGTTATTCAAGCCGTTAT
TATGCGCGACAAGACCACTGGCCGTCCCCGTGGCTTTGGCTTTGTCGTCTTCTCTGATCCTTCCGTTCTTGATCAGGTTCTTCAAGATAAGCACACCATCGATGGCCGCC
AGGTTTTTTTTTTTTCCCCTCGCCTCTTCTTCTGCAATTTTCTATCTGCATTACTTCGTTGTTTTATTTTGTTTTGTATTTCCTCCACGGTTTTGCTTTTTGTTGTTTTC
ATTATGGGGATTTTGGGAATCATGTTGTTGTGGCCTGTAGGTAGTGGTGGACTGTTGATTACTTTAATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACTCCGACGAGGGGAAGCTTTTCATTGGAGGAATAGCTTGGGACACCTCCGAGGAGAAGCTTAGAGACTATTTCTCCCAATTCGGTGAAGTTATTCAAGCCGTTAT
TATGCGCGACAAGACCACTGGCCGTCCCCGTGGCTTTGGCTTTGTCGTCTTCTCTGATCCTTCCGTTCTTGATCAGGTTCTTCAAGATAAGCACACCATCGATGGCCGCC
AGGTTTTTTTTTTTTCCCCTCGCCTCTTCTTCTGCAATTTTCTATCTGCATTACTTCGTTGTTTTATTTTGTTTTGTATTTCCTCCACGGTTTTGCTTTTTGTTGTTTTC
ATTATGGGGATTTTGGGAATCATGTTGTTGTGGCCTGTAGGTAGTGGTGGACTGTTGATTACTTTAATTTAG
Protein sequenceShow/hide protein sequence
MDSDEGKLFIGGIAWDTSEEKLRDYFSQFGEVIQAVIMRDKTTGRPRGFGFVVFSDPSVLDQVLQDKHTIDGRQVFFFSPRLFFCNFLSALLRCFILFCISSTVLLFVVF
IMGILGIMLLWPVGSGGLLITLI