; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G010750 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G010750
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionzinc finger HIT domain-containing protein 3
Genome locationchr05:18342441..18347008
RNA-Seq ExpressionLsi05G010750
SyntenyLsi05G010750
Gene Ontology termsGO:0000463 - maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0000492 - box C/D snoRNP assembly (biological process)
GO:0048254 - snoRNA localization (biological process)
GO:0005634 - nucleus (cellular component)
GO:0070761 - pre-snoRNP complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045392.1 uncharacterized protein E6C27_scaffold422G00030 [Cucumis melo var. makuwa]4.5e-3460.93Show/hide
Query:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH
        MKHHPNTNAPYALHL                          +VPC +KPVS  DQSTAPN + VDRPICVGDQNEVLEK QLEAI               
Subjt:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH

Query:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISS
         ASSSEIHN LNDE+L+K ILAIDSS DPETELDKAMEDEAFRIFS K S+
Subjt:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISS

XP_004146755.1 zinc finger HIT domain-containing protein 3 isoform X5 [Cucumis sativus]3.8e-3368.46Show/hide
Query:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS
        LC A +   +C K   EVPC +KPVS GDQSTA N   VDRPICVGDQNEVLEK QLEAI                ASSSEIHN LNDE+LQK ILAIDS
Subjt:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS

Query:  SPDPETELDKAMEDEAFRIFSRKISSIIGS
        SPDPETE+DKAMEDEAFRIFS KISSII S
Subjt:  SPDPETELDKAMEDEAFRIFSRKISSIIGS

XP_008464781.1 PREDICTED: uncharacterized protein LOC103502587 isoform X2 [Cucumis melo]9.7e-3762.58Show/hide
Query:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH
        MKHHPNTNAPYALHL                          +VPC +KPVS  DQSTAPN + VDRPICVGDQNEVLEK QLEAI               
Subjt:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH

Query:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISSIIGS
         ASSSEIHN LNDE+L+K ILAIDSS DPETELDKAMEDEAFRIFS KISSII S
Subjt:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISSIIGS

XP_022157884.1 zinc finger HIT domain-containing protein 3 isoform X1 [Momordica charantia]2.6e-3469.77Show/hide
Query:  LC-AGFSLSLCLKLLSEVPCVKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSS
        LC A +   +C K   EVPCVKPVSAGDQSTAPN +LVDRPICV DQ+EVLEK QLEAI                ASSSEI N+LNDE LQKLI AI SS
Subjt:  LC-AGFSLSLCLKLLSEVPCVKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSS

Query:  PDPETELDKAMEDEAFRIFSRKISSIIGS
        PDPETELD+AMEDEAFRIFS KISSIIGS
Subjt:  PDPETELDKAMEDEAFRIFSRKISSIIGS

XP_031743374.1 uncharacterized protein LOC101208978 isoform X3 [Cucumis sativus]6.5e-3373.28Show/hide
Query:  LSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMED
        +SEVPC +KPVS GDQSTA N   VDRPICVGDQNEVLEK QLEAI                ASSSEIHN LNDE+LQK ILAIDSSPDPETE+DKAMED
Subjt:  LSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMED

Query:  EAFRIFSRKISSIIGS
        EAFRIFS KISSII S
Subjt:  EAFRIFSRKISSIIGS

TrEMBL top hitse value%identityAlignment
A0A0A0KDK5 HIT-type domain-containing protein1.8e-3368.46Show/hide
Query:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS
        LC A +   +C K   EVPC +KPVS GDQSTA N   VDRPICVGDQNEVLEK QLEAI                ASSSEIHN LNDE+LQK ILAIDS
Subjt:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS

Query:  SPDPETELDKAMEDEAFRIFSRKISSIIGS
        SPDPETE+DKAMEDEAFRIFS KISSII S
Subjt:  SPDPETELDKAMEDEAFRIFSRKISSIIGS

A0A1S3CM88 zinc finger HIT domain-containing protein 3 isoform X11.6e-3267.69Show/hide
Query:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS
        LC A +   +C K   EVPC +KPVS  DQSTAPN + VDRPICVGDQNEVLEK QLEAI                ASSSEIHN LNDE+L+K ILAIDS
Subjt:  LC-AGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDS

Query:  SPDPETELDKAMEDEAFRIFSRKISSIIGS
        S DPETELDKAMEDEAFRIFS KISSII S
Subjt:  SPDPETELDKAMEDEAFRIFSRKISSIIGS

A0A1S3CNV6 uncharacterized protein LOC103502587 isoform X24.7e-3762.58Show/hide
Query:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH
        MKHHPNTNAPYALHL                          +VPC +KPVS  DQSTAPN + VDRPICVGDQNEVLEK QLEAI               
Subjt:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH

Query:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISSIIGS
         ASSSEIHN LNDE+L+K ILAIDSS DPETELDKAMEDEAFRIFS KISSII S
Subjt:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISSIIGS

A0A5A7TPU7 Uncharacterized protein2.2e-3460.93Show/hide
Query:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH
        MKHHPNTNAPYALHL                          +VPC +KPVS  DQSTAPN + VDRPICVGDQNEVLEK QLEAI               
Subjt:  MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPC-VKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFH

Query:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISS
         ASSSEIHN LNDE+L+K ILAIDSS DPETELDKAMEDEAFRIFS K S+
Subjt:  TASSSEIHNSLNDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISS

A0A6J1DXU2 zinc finger HIT domain-containing protein 3 isoform X11.3e-3469.77Show/hide
Query:  LC-AGFSLSLCLKLLSEVPCVKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSS
        LC A +   +C K   EVPCVKPVSAGDQSTAPN +LVDRPICV DQ+EVLEK QLEAI                ASSSEI N+LNDE LQKLI AI SS
Subjt:  LC-AGFSLSLCLKLLSEVPCVKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSS

Query:  PDPETELDKAMEDEAFRIFSRKISSIIGS
        PDPETELD+AMEDEAFRIFS KISSIIGS
Subjt:  PDPETELDKAMEDEAFRIFSRKISSIIGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G28820.1 HIT-type Zinc finger family protein1.4e-1242.98Show/hide
Query:  EVPCVKPVSAGD----------QSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETE
        EVP  +P  A D           ++   E  V RPI V ++  +LEK Q EAI                ASSSEI  +L DE LQKLI +IDSS +P  E
Subjt:  EVPCVKPVSAGD----------QSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETE

Query:  LDKAMEDEAFRIFSRKISSII
        LD+AM  EAFR F+ KI S I
Subjt:  LDKAMEDEAFRIFSRKISSII

AT4G28820.2 HIT-type Zinc finger family protein1.4e-1242.98Show/hide
Query:  EVPCVKPVSAGD----------QSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETE
        EVP  +P  A D           ++   E  V RPI V ++  +LEK Q EAI                ASSSEI  +L DE LQKLI +IDSS +P  E
Subjt:  EVPCVKPVSAGD----------QSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSLNDERLQKLILAIDSSPDPETE

Query:  LDKAMEDEAFRIFSRKISSII
        LD+AM  EAFR F+ KI S I
Subjt:  LDKAMEDEAFRIFSRKISSII


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTATCTTTATTGAAAAGTCTCTGACCTTCATTCATTTGTGTGCTGGCTTCTCCCTTTCACTTTGCTT
GAAGCTGCTCTCTGAAGTGCCCTGTGTCAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGAAGCACTTGTAGATAGGCCAATATGTGTTGGAGACCAGAATG
AAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGACCATTAACGAACTTACAATCTAGGTTTCTACGCATCTTTCATACAGCTTCTTCCTCAGAAATACACAATAGTTTG
AATGATGAGAGACTCCAAAAGCTCATCCTTGCCATTGATAGTTCACCAGATCCAGAAACTGAACTTGATAAAGCTATGGAAGATGAAGCATTTCGCATTTTCAGCAGAAA
GATATCATCCATCATCGGCTCCTAG
mRNA sequenceShow/hide mRNA sequence
TATGAACCAAAACACTCCTTTTTGGTGTATTTCGGTTTTGTCAAAAATCCTCTCGTCGGACGGTGAAGCCAGGCGCCAAACCCCCTCCGCATTGAGTTTAAGAAATTGAA
CATTCTATGGGTCCTCGGAAATGTCAGGTCTGCAATGAAGCACCATCCAAATACAAATGCCCCCTATGCCTTGCACCTTATCTTTATTGAAAAGTCTCTGACCTTCATTC
ATTTGTGTGCTGGCTTCTCCCTTTCACTTTGCTTGAAGCTGCTCTCTGAAGTGCCCTGTGTCAAGCCTGTGTCTGCAGGGGACCAATCAACTGCTCCTAATGAAGCACTT
GTAGATAGGCCAATATGTGTTGGAGACCAGAATGAAGTACTTGAAAAGTTGCAGCTAGAGGCTATTGGACCATTAACGAACTTACAATCTAGGTTTCTACGCATCTTTCA
TACAGCTTCTTCCTCAGAAATACACAATAGTTTGAATGATGAGAGACTCCAAAAGCTCATCCTTGCCATTGATAGTTCACCAGATCCAGAAACTGAACTTGATAAAGCTA
TGGAAGATGAAGCATTTCGCATTTTCAGCAGAAAGATATCATCCATCATCGGCTCCTAGCCCCAATGGTCACAGATGGAGGAGGGAAACAATTTTTCAAGACGTGTATAT
GTATAATCAATGGGACACATTTCGGCCCCCTTGGCATTAGTGATCGGCTCAGCAGATGCTGATTTCAGCAACGAATGGTGCGTCTCGGATAGTAGTAATTCTGTAGGAGG
CCATCCAAGTGCTCAGCTGCGATGTTTAATGGTGATCAATGTGCCAAGTTTTAGTGATCAGTTTTCAAATACTACATAGGAATCTACCCTTCTGAGGATCAATCAAACTC
TCCTGTTTAATGATTTTTGTAGACTCAAAAGTATGTAGCTAGTCATGTTCTGACTTGAAGACTTGCGATTGACTTAACAAACTGAAAGTTGAAGGTTTTAGACCACAAAA
TTAGCATCGGTTTTATCTTGATGAATCAGACTAATTTTAACAGGGA
Protein sequenceShow/hide protein sequence
MKHHPNTNAPYALHLIFIEKSLTFIHLCAGFSLSLCLKLLSEVPCVKPVSAGDQSTAPNEALVDRPICVGDQNEVLEKLQLEAIGPLTNLQSRFLRIFHTASSSEIHNSL
NDERLQKLILAIDSSPDPETELDKAMEDEAFRIFSRKISSIIGS