CuGenDBv2

Gene ID	Lsi05G010960
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Transcription initiation factor IIF subunit alpha
Genome location	chr05:18711149..18716099
RNA-Seq Expression	Lsi05G010960
Synteny	Lsi05G010960
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0032968 - positive regulation of transcription elongation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component) GO:0001096 - TFIIF-class transcription factor complex binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function) GO:0008168 - methyltransferase activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domains	IPR008851 - Transcription initiation factor IIF, alpha subunit IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6606328.1 Transcription initiation factor IIF subunit alpha, partial [Cucurbita argyrosperma subsp. sororia]

2.1e-260

83.39

Show/hide

Query:  GWEMSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK
        G  MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK
Subjt:  GWEMSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK

Query:  DGLQGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEE
        +GLQGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEE
Subjt:  DGLQGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEE

Query:  AEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDH
        AEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNKKGGGDDDDEEG RGGDH
Subjt:  AEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDH

Query:  DLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGG
        DLDDDDI+K                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGG
Subjt:  DLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGG

Query:  LSKSGKELKKLLRRTGGLNDSDGEDD-DDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMK
        LSKSGKELKKLLRRTGGLNDSDGE++ DDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMK
Subjt:  LSKSGKELKKLLRRTGGLNDSDGEDD-DDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMK

Query:  TETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKP
        TETESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKP
Subjt:  TETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKP

Query:  ED
        ED
Subjt:  ED

XP_004152016.1 transcription initiation factor IIF subunit alpha isoform X1 [Cucumis sativus]

8.9e-272

86.29

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+KKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
        SGKELKKLLRRTGGLNDSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE

Query:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        SK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_016900419.1 PREDICTED: LOW QUALITY PROTEIN: transcription initiation factor IIF subunit alpha [Cucumis melo]

9.9e-271

86.12

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAE 
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+KKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
        SGKELKKLLRRTGGLNDSDGEDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE

Query:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
         K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_022931161.1 transcription initiation factor IIF subunit alpha-like isoform X1 [Cucurbita moschata]

1.9e-261

83.97

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNKKGGGDDDDEEGPRGG+HDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET
        SGKELKKLLRRTGGLNDSDG E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET
Subjt:  SGKELKKLLRRTGGLNDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET

Query:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

XP_038888042.1 transcription initiation factor IIF subunit alpha isoform X1 [Benincasa hispida]

2.1e-273

87.29

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDL+LKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE VGTSGRGRRKPTGDENEGN SDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
        SGKELKKLLRRTGGLNDSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE

Query:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        SKSTDE V TSKSTASKGAPA VKTEPA+HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCA6 Transcription initiation factor IIF subunit alpha

4.3e-272

86.29

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLK SCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASAS+DKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+KKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
        SGKELKKLLRRTGGLNDSDGEDDDDDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE

Query:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        SK+TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A1S4DWR2 Transcription initiation factor IIF subunit alpha

4.8e-271

86.12

Show/hide

Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAE 
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKE+VGTSGRGRRK TGDENEGN SDRGEEDEEEEA RKNRLGL+KKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
        SGKELKKLLRRTGGLNDSDGEDD+DDDD DEDTGGTPVLPSKQKDTVKEEAAA+SPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETE

Query:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
         K TDEGVPTSKSTASKGAPASVKTEP++HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQK NGGPSYVVLRKPED
Subjt:  SKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1E3E1 Transcription initiation factor IIF subunit alpha

1.4e-257

82.8

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MSFDLLLKPSCSGCGS+T+LYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT      EYNVRASASSDKNYFIGRFMSGLPNFS+KRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQL+DALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK++VG SGRGRRK TGDENEGNASDRGEEDEEEEA RKNRLGLNKK  GDDDDEEGPRGGDHD+D
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTET
        SGKELKKLLRRTGGLNDSDGEDDDDDDD +ED GGTPV+ SKQKDTVKEEAAASSPSKP PSGS+KGTPS+ K +KGKRK NG+DVKPS+ PPKK+KTET
Subjt:  SGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK-NGEDVKPSSAPPKKMKTET

Query:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        +SKSTDEGV TSKSTASKGAPASVKTE A  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1ESX1 Transcription initiation factor IIF subunit alpha

9.0e-262

83.97

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+SVG +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNKKGGGDDDDEEGPRGG+HDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIEK                                      GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET
        SGKELKKLLRRTGGLNDSDG E+DDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET
Subjt:  SGKELKKLLRRTGGLNDSDG-EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTET

Query:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
        ESKSTDEGV TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPED
Subjt:  ESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

A0A6J1K1N5 Transcription initiation factor IIF subunit alpha

2.9e-260

83.19

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS DLLLKPSCSGCGSTTELYGSNCKHMTLCL+CGKTMAENKGKCYDCGAT      EYNVRAS+SSDKNYFIGRFMSGLPNFSKKRNAENKWSLYK+GL
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQLTDALREKYKNRPWLLEDETGQ QFQGHLEGSQSATYYLLVLQGKEFTAIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD
        KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDK+S+G +GRGRRKPT DENEGN SDRGEEDEEEEA RKNRLGLNKKGGGDDDDEEGPRGGDHDLD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLD

Query:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK
        DDDIE                                       GDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDE+DEDEENEGEGGLSK
Subjt:  DDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSK

Query:  SGKELKKLLRRTGGLNDSDG---EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKT
        SGKELKKLLRR+GGLNDSDG   EDDDDDDDA+E++GGTPV PSKQKD VKEEAAA+SPSKP PSGSAKGT STAKTAKGKRKNGEDVKPSSAPPKKMKT
Subjt:  SGKELKKLLRRTGGLNDSDG---EDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKT

Query:  ETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPE
        ETESKSTDEG+ TS+STASKGA ASVKTEPA+ SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLR+ EDKNAFAEILRRISRIQKTNGGPSYVVLRKPE
Subjt:  ETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPE

Query:  D
        D
Subjt:  D

SwissProt top hits

e value

%identity

Alignment

Q54WV4 General transcription factor IIF subunit 1

3.9e-04

23.49

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Query:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADG
        K  PW LED  G   +QG++EG+Q S+ Y+L + Q      A+P                  +W      YNF    +++ LT EEAE+ MK + +  D 
Subjt:  KNRPWLLEDETGQFQFQGHLEGSQ-SATYYLLVLQGK-EFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADG

Query:  YERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLF
        +   + K      +  G  E    K          R    D N    ++  ++ ++  A+R+ R     +G G+D D         D DDD    G  L 
Subjt:  YERWMMKAASNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLF

Query:  YVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRR
                                 G   +Q+  D+ E +   T+          E + +  +     + + D  D+D++ +  GG              
Subjt:  YVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRR

Query:  TGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKD-----TVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGK-RKNGEDVKPSSAPPKKMKTETESKSTD
        TGG +D D ++DD+D D D+ +    V      D     +VK+E      SK +     K   S+ K+ + K +KN  D    +   KK+K E  S    
Subjt:  TGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKD-----TVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGK-RKNGEDVKPSSAPPKKMKTETESKSTD

Query:  EGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNG
        +  P S S   +    ++      +  P TEE I+ VL++   V + DL+  FK  L+ P++K  F  ++  ++R+ + NG
Subjt:  EGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNG

Q9SU25 Transcription initiation factor IIF subunit alpha

1.1e-168

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Query:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL
        MS  L L  SC GCGS ++LYGS+C+HMTLCL CG+TMA+NK KC++CG        EYNVRA+A +DKNYFIGRF++GLPNF  K+ +ENKWSL KD  
Subjt:  MSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGAT------EYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGL

Query:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE
        QGRQ TDA REK KN+PW+LEDETGQFQ+QGHLEGSQSATYYLLV+Q KEF AIPAG                 W      YNFNKVAQYKQLTLEEAEE
Subjt:  QGRQLTDALREKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEE

Query:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGD
        KMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+K   DDDDEEGPRGGD
Subjt:  KMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGD

Query:  HDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGE
         D+DDDDIEK                                      GDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E E
Subjt:  HDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGE

Query:  GGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPK
        GGLSKSGKELKKLL +  GL++SD +DDDD DD +E   GT V  SKQK+  KEE   ++P+KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  K
Subjt:  GGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLPSKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPK

Query:  KMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTN
        K+KTE + KS+ +    +  + S     +VK EPA+         +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  
Subjt:  KMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------HSGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTN

Query:  GGPSYVVLRK
        G  ++VVLR+
Subjt:  GGPSYVVLRK

Arabidopsis top hits

e value

%identity

Alignment

AT4G12610.1 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

3.0e-108

56.99

Show/hide

Query:  LQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---
        +Q KEF AIPAG                 W      YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   
Subjt:  LQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---

Query:  GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMH
        GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+K   DDDDEEGPRGGD D+DDDDIEK                                   
Subjt:  GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMH

Query:  QMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLP
           GDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL++SD +DDDD DD +E   GT V  
Subjt:  QMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLP

Query:  SKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------H
        SKQK+  KEE   ++P+KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPA+         
Subjt:  SKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------H

Query:  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK
        +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK

AT4G12610.2 transcription activators;DNA binding;RNA polymerase II transcription factors;catalytics;transcription initiation factors

3.0e-108

56.99

Show/hide

Query:  LQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---
        +Q KEF AIPAG                 W      YNFNKVAQYKQLTLEEAEEKMKNR+KTADGY+RWMMKAA+NGPA FGEV+  ++KES GTS   
Subjt:  LQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAASNGPAAFGEVEKFDDKESVGTS---

Query:  GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMH
        GRGR+K + GDE EGN SDRG+EDEEEEA RK+RLGLN+K   DDDDEEGPRGGD D+DDDDIEK                                   
Subjt:  GRGRRKPT-GDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWARPSPSYGNQMH

Query:  QMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLP
           GDDWEHEEIFTDDDE    D EERED LAPE+PAPPEIKQDEDDE+ E E EGGLSKSGKELKKLL +  GL++SD +DDDD DD +E   GT V  
Subjt:  QMSGDDWEHEEIFTDDDETTAPDREERED-LAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLP

Query:  SKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------H
        SKQK+  KEE   ++P+KP PSG  +GTP  AK +KGKRK  +G+  KPSS+  KK+KTE + KS+ +    +  + S     +VK EPA+         
Subjt:  SKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRK--NGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPAT--------H

Query:  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK
        +GPVTE+EIRAVL ++  VTTQDLV++FKARL+T EDKNAFA ILR+IS+IQK  G  ++VVLR+
Subjt:  SGPVTEEEIRAVLRQRTPVTTQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGGATGGGGTGGGAGATGTCGTTCGATTTGCTGCTGAAGCCATCGTGTAGTGGATGCGGATCCACGACGGAGTTGTATGGGAGCAATTGCAAGCACATGACATTGTG
CTTGACCTGTGGAAAAACTATGGCTGAGAACAAAGGCAAATGTTATGACTGTGGCGCTACTGAATACAATGTTCGAGCAAGTGCAAGTAGCGACAAGAACTACTTCATCG
GTAGGTTCATGAGTGGGCTGCCGAACTTTTCGAAGAAGAGAAATGCTGAGAATAAATGGTCTCTTTACAAGGATGGTCTACAAGGACGCCAACTTACGGATGCCCTTCGG
GAAAAGTATAAGAATAGACCCTGGCTGTTGGAAGATGAAACGGGCCAATTTCAATTCCAAGGTCATCTTGAGGGCTCACAATCAGCAACATACTACTTGCTTGTATTGCA
AGGAAAGGAATTTACTGCCATTCCTGCAGGCTTCTATGTTGTCCGGATGAAAAATTTGAAGTCATTCATGGTGGTAGCAGAATGGCTGACCTCAATTTTCAGGTACAACT
TCAACAAAGTGGCACAGTATAAGCAACTTACGTTGGAGGAGGCAGAAGAAAAAATGAAGAATCGAAAGAAGACAGCAGATGGATATGAAAGATGGATGATGAAAGCTGCA
AGTAATGGTCCTGCTGCATTTGGTGAGGTTGAGAAGTTTGATGACAAAGAAAGTGTTGGTACTAGTGGTAGGGGACGGAGAAAACCTACTGGTGATGAGAATGAAGGCAA
TGCCTCGGATAGGGGAGAAGAAGATGAAGAAGAGGAGGCACAGAGGAAGAACAGATTGGGACTCAATAAAAAGGGTGGCGGCGATGACGATGATGAGGAAGGTCCTAGGG
GTGGTGACCATGACTTGGATGATGATGATATTGAGAAAGGTCAAGTGCTTTTCTACGTCATTGTCATCTCTATAGAATGCCACTTGCCGTCTGTTGACTGTTTATGGGCT
AGGCCATCACCATCATATGGGAACCAAATGCATCAAATGAGTGGAGACGATTGGGAGCACGAAGAGATTTTTACTGATGATGATGAAACTACTGCTCCGGATCGTGAAGA
AAGGGAGGATTTAGCCCCTGAAGTTCCTGCACCTCCAGAAATCAAGCAGGATGAAGACGATGAGGATGAAGAAAATGAAGGGGAGGGGGGGCTGAGCAAATCTGGGAAAG
AGTTGAAGAAATTGCTTAGGCGTACTGGGGGGCTTAATGATTCAGATGGAGAGGATGATGACGATGATGACGATGCGGATGAGGATACTGGTGGCACTCCCGTCTTACCT
TCGAAGCAGAAGGATACAGTTAAAGAAGAAGCTGCAGCCAGCAGTCCCTCAAAACCAACGCCTTCTGGATCTGCTAAGGGAACCCCTTCTACTGCAAAGACAGCAAAGGG
GAAGAGGAAAAATGGTGAGGATGTGAAACCATCCAGTGCACCTCCAAAGAAAATGAAAACAGAGACGGAATCGAAGTCCACAGATGAAGGTGTACCTACTTCTAAAAGTA
CGGCCTCAAAAGGTGCACCAGCATCGGTCAAAACTGAACCAGCAACGCATTCTGGACCCGTTACTGAGGAGGAAATTAGGGCTGTTTTGCGGCAAAGGACACCTGTAACT
ACACAGGATCTTGTTGCAAAATTCAAAGCAAGACTACGAACTCCAGAGGACAAGAATGCTTTTGCAGAAATACTTAGGAGAATTTCAAGGATTCAAAAGACGAACGGAGG
ACCGAGTTACGTTGTGCTGAGAAAACCTGAAGACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MWMGWEMSFDLLLKPSCSGCGSTTELYGSNCKHMTLCLTCGKTMAENKGKCYDCGATEYNVRASASSDKNYFIGRFMSGLPNFSKKRNAENKWSLYKDGLQGRQLTDALR
EKYKNRPWLLEDETGQFQFQGHLEGSQSATYYLLVLQGKEFTAIPAGFYVVRMKNLKSFMVVAEWLTSIFRYNFNKVAQYKQLTLEEAEEKMKNRKKTADGYERWMMKAA
SNGPAAFGEVEKFDDKESVGTSGRGRRKPTGDENEGNASDRGEEDEEEEAQRKNRLGLNKKGGGDDDDEEGPRGGDHDLDDDDIEKGQVLFYVIVISIECHLPSVDCLWA
RPSPSYGNQMHQMSGDDWEHEEIFTDDDETTAPDREEREDLAPEVPAPPEIKQDEDDEDEENEGEGGLSKSGKELKKLLRRTGGLNDSDGEDDDDDDDADEDTGGTPVLP
SKQKDTVKEEAAASSPSKPTPSGSAKGTPSTAKTAKGKRKNGEDVKPSSAPPKKMKTETESKSTDEGVPTSKSTASKGAPASVKTEPATHSGPVTEEEIRAVLRQRTPVT
TQDLVAKFKARLRTPEDKNAFAEILRRISRIQKTNGGPSYVVLRKPED

Lsi05G010960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome