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Lsi05G011250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G011250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationchr05:19036814..19043111
RNA-Seq ExpressionLsi05G011250
SyntenyLsi05G011250
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606311.1 RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. sororia]8.3e-1163.49Show/hide
Query:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQK
        MAD E AVPKFGEW+D+DA  PDNYTAIF +VRE RQD   R  T  Q+++  +NQN EQNQK
Subjt:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQK

KAG7036250.1 hypothetical protein SDJN02_03052 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1162.69Show/hide
Query:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKVMKS
        MAD E AVPKFGEW+D+DA  PDNYTAIF +VRE RQD   R  T  Q+++  +NQN EQNQKV  S
Subjt:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKVMKS

XP_038888923.1 RPM1-interacting protein 4-like [Benincasa hispida]1.9e-1575Show/hide
Query:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQS-TDSTNNQNHEQNQK
        MADNEA VPKFGEWDD+DAKAP+NYTAIF +VREGRQ+P  RA T  +S  +STNNQNHE NQK
Subjt:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQS-TDSTNNQNHEQNQK

TrEMBL top hitse value%identityAlignment
A0A0A0L950 AvrRpt-cleavage domain-containing protein1.0e-1473.44Show/hide
Query:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV
        MADNE AVPKFGEWDD DAKAP+NYTAIFN+VRE RQD   R  T ++  DSTN+QNHEQNQK+
Subjt:  MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV

A0A6N2AQE8 AvrRpt-cleavage domain-containing protein6.2e-0445.16Show/hide
Query:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQK
        +D  AAVP+FGEWD+ D ++ DNYT IFN+VRE +Q     + T S+++++T   N E+ Q+
Subjt:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQK

M1CPC8 RIN4c protein4.7e-0446.03Show/hide
Query:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV
        +D  AAVP+FGEWD+ D ++ DNYT IFN+VRE +Q     + T S+++++T   N E+ Q V
Subjt:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV

M1CPD1 RIN4c protein4.7e-0446.03Show/hide
Query:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV
        +D  AAVP+FGEWD+ D ++ DNYT IFN+VRE +Q     + T S+++++T   N E+ Q V
Subjt:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV

M1CPD2 RIN4c protein4.7e-0446.03Show/hide
Query:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV
        +D  AAVP+FGEWD+ D ++ DNYT IFN+VRE +Q     + T S+++++T   N E+ Q V
Subjt:  ADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATAACGAAGCTGCAGTTCCAAAATTTGGTGAGTGGGACGACAAAGATGCCAAAGCACCAGACAACTACACGGCTATTTTCAACCAGGTGCGGGAAGGGAGACA
AGATCCAAGAACACGAGCATCAACACAATCACAGTCGACCGACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACC
AACCACATGAGATTATTGAGATTCTGATATCCATTGTCTTACATTGTTGCCTGCCTTTAAAACTTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGAAAATGATATTGTT
CTTCATCTTCATAAGCACAGTTTTAAAGTACATGGACATATCCTTTTCCCACACAATGCTTCTCTACATCAGAGAGGGATTGCAACCAAGAGATGTATTGAGAAAATCAC
CATTGTTGAAGTACTGGCCTTTGAATATCTCATGAATGTTAGAAAGAGATTCTTTCCTTCGCAGGATCGCCGAAAGTCCTTTAGCACAAATGATAAAAAGAAACGATGA
mRNA sequenceShow/hide mRNA sequence
AATGTGTGTTATTGGAGAGGGCAGAAGAGACGAAGACTGGTACAGTTGCTACTCCTTTGGTCTTTTCTTTCCTTTATTTCTTTATTTAATTAACAATGGAACTTCCTTAA
TCCTTCCTTCCTTTCTTCATCAACCCATCTCTCTCTCCTCCCTCTCTTCCTCTCTCTAAACTCATCGCTTCCATATGCTCCGATTCCGGCCACCATCTTCGCCGTGATTT
CTCGTCGGAGTTCAGTAGATCTTTCCCATTTCGGACCAGTTCCCGCCGCCGCGCCTCCATCTTCGCTGGACAAGGAGAAAAAAAACCACCATGGCTGATAACGAAGCTGC
AGTTCCAAAATTTGGTGAGTGGGACGACAAAGATGCCAAAGCACCAGACAACTACACGGCTATTTTCAACCAGGTGCGGGAAGGGAGACAAGATCCAAGAACACGAGCAT
CAACACAATCACAGTCGACCGACAGCACAAACAACCAAAATCATGAACAAAATCAAAAGGTAATGAAGAGCTTTCTTCCATTTCTGAACCAACCACATGAGATTATTGAG
ATTCTGATATCCATTGTCTTACATTGTTGCCTGCCTTTAAAACTTTTCAGAAATGCTGTTGTTTTCCATGGCCAAGAAAATGATATTGTTCTTCATCTTCATAAGCACAG
TTTTAAAGTACATGGACATATCCTTTTCCCACACAATGCTTCTCTACATCAGAGAGGGATTGCAACCAAGAGATGTATTGAGAAAATCACCATTGTTGAAGTACTGGCCT
TTGAATATCTCATGAATGTTAGAAAGAGATTCTTTCCTTCGCAGGATCGCCGAAAGTCCTTTAGCACAAATGATAAAAAGAAACGATGA
Protein sequenceShow/hide protein sequence
MADNEAAVPKFGEWDDKDAKAPDNYTAIFNQVREGRQDPRTRASTQSQSTDSTNNQNHEQNQKVMKSFLPFLNQPHEIIEILISIVLHCCLPLKLFRNAVVFHGQENDIV
LHLHKHSFKVHGHILFPHNASLHQRGIATKRCIEKITIVEVLAFEYLMNVRKRFFPSQDRRKSFSTNDKKKR