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Lsi05G011260 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G011260
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RNF4-like
Genome locationchr05:19043890..19046915
RNA-Seq ExpressionLsi05G011260
SyntenyLsi05G011260
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068067.1 E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo var. makuwa]1.3e-4491.51Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMFI
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAGMFI
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMFI

Query:  SAGGGL
         AGG L
Subjt:  SAGGGL

XP_004144388.1 E3 ubiquitin-protein ligase RNF4 [Cucumis sativus]1.1e-4093.75Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGHT RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

XP_008460369.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo]4.2e-4092.71Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

XP_008460373.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]4.2e-4092.71Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

XP_038888129.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida]2.9e-4196.88Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQLRFQEAQVNQQQ VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

TrEMBL top hitse value%identityAlignment
A0A1S3CBW2 E3 ubiquitin-protein ligase RNF4-like isoform X22.0e-4092.71Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

A0A1S3CCB4 E3 ubiquitin-protein ligase RNF4-like isoform X12.0e-4092.71Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

A0A5D3DQU9 E3 ubiquitin-protein ligase RNF4-like isoform X16.1e-4591.51Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMFI
        MSTQ MRGH  RGYHRRKS+DLDLNSMPPTENRDQGETSQLR Q+AQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAGMFI
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMFI

Query:  SAGGGL
         AGG L
Subjt:  SAGGGL

A0A6J1HFU4 E3 ubiquitin-protein ligase RNF4-like1.0e-3993.75Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MSTQ MRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ  F EAQVNQQQ VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

A0A6J1HQI7 E3 ubiquitin-protein ligase RNF4-like5.9e-4093.75Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
        MST+ MRGHTARGYHRRKS+DLDLNSMPPTENRDQGETSQ  FQEAQVNQQQ VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G07200.1 RING/U-box superfamily protein8.7e-0444.29Show/hide
Query:  TENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNIVDVDA
        T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKSR   R   +VDV++
Subjt:  TENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNIVDVDA

AT3G07200.2 RING/U-box superfamily protein8.7e-0444.29Show/hide
Query:  TENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNIVDVDA
        T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKSR   R   +VDV++
Subjt:  TENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNAR-KNIVDVDA

AT5G48655.1 RING/U-box superfamily protein5.7e-1146.46Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG
        M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG

AT5G48655.2 RING/U-box superfamily protein5.7e-1146.46Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG
        M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG

AT5G48655.3 RING/U-box superfamily protein5.7e-1146.46Show/hide
Query:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG
        M+T  +R    RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++G
Subjt:  MSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGGGTTGCTGAGGAGCTCCAAAATATCGATGAGTACTCAGACAATGAGGGGACATACGGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACCTAAATAG
CATGCCACCGACTGAGAATCGAGATCAAGGAGAGACATCTCAATTGAGGTTTCAGGAAGCACAGGTTAATCAACAACAGCCCGTACAACCTGCAATGATTGACATTGAGG
CAATTGATGACGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGGCGGAATGCTAGGAAGAATATAGTTGACGTGGATGCAGGTATGTTT
ATTTCAGCAGGTGGAGGACTATAG
mRNA sequenceShow/hide mRNA sequence
ATTGGGTATGAGAAGAAGACGTGGCGCATTTCAGGCTCGGGCTCCTCTTTCACTGTCCCGCAAGAACCCTGGAACTTCCCTCTGCCGTATCTCCATTTTCGTCGTCAATC
CCAACCCTTTTCTTCATTTTTCCCTTTATAATGCCCATTTTCCTTTCTTTTTCCCACCCATCTCTCAACCCTTAGAACCCCAACTACAGATATCACAAACCCTAGAACTA
ATCATCTCATCTAATCTAATCTATTTACCACCTCAAATTTCAAGATACTTTTCAACCGCTTATTTCAGATTGAAGACTTGATGTTTTGGTTCGTGATCGAGTTGGTTTGT
GTAGTTGGGGCAAACGATCCGATGGAGTAGGTATTGTTTGGAGATGGATTTTTATGATCGGGTTGCTGAGGAGCTCCAAAATATCGATGAGTACTCAGACAATGAGGGGA
CATACGGCAAGAGGTTATCATCGTAGGAAATCAATGGACTTGGACCTAAATAGCATGCCACCGACTGAGAATCGAGATCAAGGAGAGACATCTCAATTGAGGTTTCAGGA
AGCACAGGTTAATCAACAACAGCCCGTACAACCTGCAATGATTGACATTGAGGCAATTGATGACGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATA
AATCCAGGCGGAATGCTAGGAAGAATATAGTTGACGTGGATGCAGGTATGTTTATTTCAGCAGGTGGAGGACTATAGCTAAGTAGATTTTTTTCGTTACTTTCCCCCTTT
GTTAATTGGGGAAGAAATTGGTAGCATGTTGGTCTATCTATTTTAATGACTTATCCCTTGCAATGCAATTTTATTTATTTTATTCTCTATTTATTTTTTATACATTCTAA
AGGCATATAGTTAGCTTGTTCATTATGAAAGGAAGCTTGGAACTTCGTTATAATAGAATGTCAAACATTGGTATTAATTAGGAAAGTAGTTTGTTGGGATTGGTGGTCAC
AGAAGCAACAGTTGGAACAGCCTTTAGATTTAGTGATTCGTGTTTTCAAACATATCCACATTACGAAGATCTTAATTTTAGGATGTTTAAGATGTTAGACATCTTGAAGC
ATTAATGACTTAGAAATTGTGAAGGCACAGAAGGTGTATTTGTTATTCCATCATTGAGATTTCGTCTAAATCTTAGCATCCATTAGTAGTTACATCCATTGTAGCACTGA
TTTTTGGAATACCTTATACTCATGTCTAGAGCATGGTAAGAGAAATTAATACATCATTATACCCAATTGCCATTGACCATCTGAAGGTCGGAGCTAATGATCATAATAGT
TTTTAGCTTGGATATTTGTAACTCCGGTTTTCAATTTCTTGTCTAGATCTTGCCATTAGCAAACCACCCACCATAATTCCGCCATTACATACTCTTTTGCTATGACATGA
CTGTATGCCACATGGCACCACTTACAATGGGTACCTTCATAGCCATTTGGTTAAAAAATTGTTGTTGGGTTTAGCTAGCTTCTCTATTGAATCTTTCAACTTCATCATCA
TGGCATGACTGAACGTTGAACTATCCATAAAAAAACTAGATTCTTCTACCAATCATCCATGGAAGTAAGGATATCAGAATCATTCACTCACATATTCTCATATCCAAAAG
GAAGAAGACCCCAGTTGAACTTATTGTGCTTAACAAGAAGTGGGAAGTGATTGGAGGTAAGATGTTACTAGGATGTCTGTGTATTCTTTCATTTTTTAAAAATGGAAGTC
AGGTTTTTTCATTAAAAAAAATGTTACTAGTGTACTCTCTAATCTTGAGGACGTGTCCCTTTTATTGCTCAAAGGAATATGTAGCCATCATCATTGCTGCTTTGAACAGA
GGCCTCCCAAATCTTTGAGATCCTTCATTAGAAGCTTCATGAATTTGGTTCTTCCTTCATTCGAAGCTTGGCCATAAATTCCAGTGAACAAAAAGCAATTATTCTTAATG
CCATAGGAAGGATCAGACCACATTACAAACAATGATACCCCTCAAAGAACTACAAGAATCAAGTGTGGCTGAACCAAAGTTCTCCTATTTGAAAGATTTTGTTTCCTGTG
GAGGATGACAAAATTTGGGCTGAAACATATAACTTGTTGGTGAACTACTAGGAAACCTCCCTTTTTTTATTTTTTTATATAGATGTTTATTATTTATATTTATG
Protein sequenceShow/hide protein sequence
MIGLLRSSKISMSTQTMRGHTARGYHRRKSMDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAGMF
ISAGGGL