; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G011350 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G011350
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionSpc97 / Spc98 family of spindle pole body (SBP) component
Genome locationchr05:19116519..19118697
RNA-Seq ExpressionLsi05G011350
SyntenyLsi05G011350
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005319 - lipid transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055731.1 hypothetical protein E6C27_scaffold181G001160 [Cucumis melo var. makuwa]6.5e-5287.9Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNR+EDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDLKTLRAIGFVLMEHLKGELR SDV DLSQSATLN CNLLD+N+EKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEK
        LSIDEIM SICSDRRKKPGKR +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEK

XP_008450999.1 PREDICTED: uncharacterized protein LOC103492413 [Cucumis melo]6.5e-5287.9Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNR+EDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDLKTLRAIGFVLMEHLKGELR SDV DLSQSATLN CNLLD+N+EKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEK
        LSIDEIM SICSDRRKKPGKR  K
Subjt:  LSIDEIMESICSDRRKKPGKRLEK

XP_011651663.2 uncharacterized protein LOC101210446 [Cucumis sativus]2.3e-4985.6Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNRIEDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDL+TLRAIGFVLMEHLKG+LR SDV DLSQS T N CNLLD+NLEKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKK
        LSIDEIM SICSDRRKKPGKR  +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEKK

XP_022156102.1 uncharacterized protein LOC111023068 [Momordica charantia]3.2e-5186.4Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEAKEILK+NRIED++WLCSLSESELDMLISIKMLVLQRAK+IGH+ LAEKFDLKTLRAIGF LMEHLKG+LRASDVPD SQSA LNGCNLLD +LEKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKK
        LSIDEIM S+CSDRRKKPGKR  +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEKK

XP_038902583.1 uncharacterized protein LOC120089238 [Benincasa hispida]1.6e-5389.6Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEAKEI K+NRIEDI+WLCSLSESELDMLISIKMLVLQRAKVIGH+DLA+KFDLKT+RAIGFVLMEHLKGEL+ASDVPDLSQSA LNGCNLLD+NLEKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKK
        LSIDEIM SICSDRRKKPGKR  +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEKK

TrEMBL top hitse value%identityAlignment
A0A0A0LBP9 Uncharacterized protein3.6e-4884Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKN RIE I+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDL+TLRAIGFVLMEHLKG+LR SDV DLSQS T N CNLLD+NLEKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKK
        LSIDEIM SICSDRRKKPGKR  +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEKK

A0A1S3BQH9 uncharacterized protein LOC1034924133.2e-5287.9Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNR+EDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDLKTLRAIGFVLMEHLKGELR SDV DLSQSATLN CNLLD+N+EKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEK
        LSIDEIM SICSDRRKKPGKR  K
Subjt:  LSIDEIMESICSDRRKKPGKRLEK

A0A1S3CBX7 uncharacterized protein LOC1034992201.2e-4883.59Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNRIEDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDLKTLR IGFVLMEHLKGELR SDV DLSQSA LN CNLLD+NLEK 
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKKKPF
        L IDEIM SIC DRRKKPGKR  +K  F
Subjt:  LSIDEIMESICSDRRKKPGKRLEKKKPF

A0A5A7UQA1 Uncharacterized protein3.2e-5287.9Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEA EILKNNR+EDI+WLCSLSESELD+LISIKMLVLQRAK IGH++LAEKFDLKTLRAIGFVLMEHLKGELR SDV DLSQSATLN CNLLD+N+EKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEK
        LSIDEIM SICSDRRKKPGKR +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEK

A0A6J1DR49 uncharacterized protein LOC1110230681.6e-5186.4Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI
        MEEAKEILK+NRIED++WLCSLSESELDMLISIKMLVLQRAK+IGH+ LAEKFDLKTLRAIGF LMEHLKG+LRASDVPD SQSA LNGCNLLD +LEKI
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKI

Query:  LSIDEIMESICSDRRKKPGKRLEKK
        LSIDEIM S+CSDRRKKPGKR  +K
Subjt:  LSIDEIMESICSDRRKKPGKRLEKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80245.1 Spc97 / Spc98 family of spindle pole body (SBP) component3.1e-2849.19Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL
        MEE  +ILKNNR +D+ W CSLSESELD+LIS+K L +QRAK+ GH++LA+KFDLK LR++G VLMEH +  ++   S  P  + Q   L+ CNLL  ++
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL

Query:  EKILSIDEIMESICSDRRKKPGKR
        +  + I+EI+  IC ++ KK  ++
Subjt:  EKILSIDEIMESICSDRRKKPGKR

AT1G80245.2 Spc97 / Spc98 family of spindle pole body (SBP) component3.1e-2849.19Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL
        MEE  +ILKNNR +D+ W CSLSESELD+LIS+K L +QRAK+ GH++LA+KFDLK LR++G VLMEH +  ++   S  P  + Q   L+ CNLL  ++
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL

Query:  EKILSIDEIMESICSDRRKKPGKR
        +  + I+EI+  IC ++ KK  ++
Subjt:  EKILSIDEIMESICSDRRKKPGKR

AT1G80245.3 Spc97 / Spc98 family of spindle pole body (SBP) component3.1e-2849.19Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL
        MEE  +ILKNNR +D+ W CSLSESELD+LIS+K L +QRAK+ GH++LA+KFDLK LR++G VLMEH +  ++   S  P  + Q   L+ CNLL  ++
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELR--ASDVPD-LSQSATLNGCNLLDNNL

Query:  EKILSIDEIMESICSDRRKKPGKR
        +  + I+EI+  IC ++ KK  ++
Subjt:  EKILSIDEIMESICSDRRKKPGKR

AT4G00695.1 FUNCTIONS IN: molecular_function unknown1.1e-2548.8Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDL-AEKFDLKTLRAIGFVLMEHLKGELR--ASDVPDLSQS-ATLNGCNLLDNN
        MEE  +ILKNNR +D+ W CSLSESELD+LIS+K LV++RAKV G +DL A+KFDLK LR++G VLME+++  +    S  P + Q  + L+ CNLL  +
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDL-AEKFDLKTLRAIGFVLMEHLKGELR--ASDVPDLSQS-ATLNGCNLLDNN

Query:  LEKILSIDEIMESICSDRRKKPGKR
        ++  + I+EI+  IC+ + KK  ++
Subjt:  LEKILSIDEIMESICSDRRKKPGKR

AT4G00695.2 FUNCTIONS IN: molecular_function unknown1.1e-2548.8Show/hide
Query:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDL-AEKFDLKTLRAIGFVLMEHLKGELR--ASDVPDLSQS-ATLNGCNLLDNN
        MEE  +ILKNNR +D+ W CSLSESELD+LIS+K LV++RAKV G +DL A+KFDLK LR++G VLME+++  +    S  P + Q  + L+ CNLL  +
Subjt:  MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDL-AEKFDLKTLRAIGFVLMEHLKGELR--ASDVPDLSQS-ATLNGCNLLDNN

Query:  LEKILSIDEIMESICSDRRKKPGKR
        ++  + I+EI+  IC+ + KK  ++
Subjt:  LEKILSIDEIMESICSDRRKKPGKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGGCGAAAGAAATTTTGAAGAATAACAGAATTGAAGATATCAATTGGCTTTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGT
TCTCCAACGTGCAAAAGTAATTGGTCATAAAGATTTAGCTGAGAAATTTGATTTGAAGACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAGAACTTA
GGGCGTCAGATGTTCCGGACCTGTCTCAATCTGCTACCTTAAATGGGTGCAACTTATTAGACAACAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGAAAGTATC
TGCTCAGACAGAAGGAAGAAACCTGGAAAAAGGTTGGAGAAGAAAAAACCTTTTGGCAACTATATTAACCTTTTGGTATTCATAAAACCTTCTATTCATATGAACTTTCA
TGATAGCACTCATGTAGCAAATCAGTTAGATAATGTATTTTCTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAAATTGAACTCTCACACGAGTTCCCTCTCCTCCTCGCGCAAAACACACCCAAGAAAAAGCCGCCGGCCACCACCAGCCGCGCATCCAGCCACCGTCCGCCGGAGTCG
TCGCGGTTGAATCTTTGACTTTGAAGTTTTCTCTGGAGTAAATTTGCGGAGGATTTCTATGGAAGAGGCGAAAGAAATTTTGAAGAATAACAGAATTGAAGATATCAATT
GGCTTTGTTCACTATCTGAATCAGAACTTGACATGCTGATTAGCATTAAAATGCTAGTTCTCCAACGTGCAAAAGTAATTGGTCATAAAGATTTAGCTGAGAAATTTGAT
TTGAAGACGCTACGTGCTATTGGGTTTGTTTTGATGGAACATCTTAAAGGAGAACTTAGGGCGTCAGATGTTCCGGACCTGTCTCAATCTGCTACCTTAAATGGGTGCAA
CTTATTAGACAACAATCTTGAGAAAATTTTGTCAATTGATGAGATAATGGAAAGTATCTGCTCAGACAGAAGGAAGAAACCTGGAAAAAGGTTGGAGAAGAAAAAACCTT
TTGGCAACTATATTAACCTTTTGGTATTCATAAAACCTTCTATTCATATGAACTTTCATGATAGCACTCATGTAGCAAATCAGTTAGATAATGTATTTTCTTAA
Protein sequenceShow/hide protein sequence
MEEAKEILKNNRIEDINWLCSLSESELDMLISIKMLVLQRAKVIGHKDLAEKFDLKTLRAIGFVLMEHLKGELRASDVPDLSQSATLNGCNLLDNNLEKILSIDEIMESI
CSDRRKKPGKRLEKKKPFGNYINLLVFIKPSIHMNFHDSTHVANQLDNVFS