CuGenDBv2

Gene ID	Lsi05G011580
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Ferredoxin
Genome location	chr05:19467803..19471002
RNA-Seq Expression	Lsi05G011580
Synteny	Lsi05G011580
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6571846.1 Ferredoxin C 2, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.8e-46

57.55

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFR+F+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

XP_022952427.1 uncharacterized protein LOC111455118 [Cucurbita moschata]

1.7e-46

58.02

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

XP_022972000.1 uncharacterized protein LOC111470650 [Cucurbita maxima]

4.5e-47

58.02

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +TDNG PSIPTHKVTVHDRERGVVHEFVVPE++Y           
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
                   I    E  +I         C         S     P+       L A  GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

XP_023511494.1 uncharacterized protein LOC111776305 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-45

57.55

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS+ELQAAV VA +TD+G PSIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

XP_038888790.1 ferredoxin C 2, chloroplastic [Benincasa hispida]

1.4e-48

59.91

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSF SVNLKPESFR+FLSTNRNR F DILKCRRKTTSTELQAAVDVAARTD+G PSIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CQF2 Ferredoxin

1.7e-44

56.6

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLP TSFR+VN+K ESFR F STNRNR F D LKCRRKTTSTELQAAVDVAAR DNG PSIP+HKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFP+SDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

A0A5A7TAG8 Ferredoxin

1.7e-44

56.6

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLP TSFR+VN+K ESFR F STNRNR F D LKCRRKTTSTELQAAVDVAAR DNG PSIP+HKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFP+SDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

A0A6J1ESD7 Ferredoxin

1.6e-45

57.55

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKPES R FLSTNRNR F D+LKCRRKT STELQA VDVA RTD+G  SIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

A0A6J1GKE0 Ferredoxin

8.3e-47

58.02

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +T+NG PSIPTHKVTVHDRERGVVHEFVVPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     RI +          +   L   GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

A0A6J1I4R5 Ferredoxin

2.2e-47

58.02

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        MDVLLPCTSFRSVNLKP SFRRF+STNRN  F DILKCRRKTTS ELQAAVDVA +TDNG PSIPTHKVTVHDRERGVVHEFVVPE++Y           
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
                   I    E  +I         C         S     P+       L A  GYALLCVGFPTSDVEVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAMADE
Subjt:  DDYALELAMADE

SwissProt top hits

e value

%identity

Alignment

Q9C7Y4 Ferredoxin C 2, chloroplastic

1.3e-20

37.74

Show/hide

Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF VPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     R+ +          +   L   GYALLCVGFPTSD+EVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAM DE
Subjt:  DDYALELAMADE

Arabidopsis top hits

e value

%identity

Alignment

AT1G32550.1 2Fe-2S ferredoxin-like superfamily protein

9.2e-22

37.74

Show/hide

Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF VPE++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER
             +      R     H         T C V     R+ +          +   L   GYALLCVGFPTSD+EVETQDEDE               ER
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDE---------------ER

Query:  DDYALELAMADE
        DDYALELAM DE
Subjt:  DDYALELAMADE

AT1G32550.2 2Fe-2S ferredoxin-like superfamily protein

3.0e-20

36.87

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Query:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD
        M ++LPCT   S+  K     R   TN  R           T + E +  V+V+  +D G   +P+HKVTVHDR+RGVVHEF   E++       Y L+ 
Subjt:  MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYD

Query:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAG-----TGYALLCVGFPTSDVEVETQDEDE------------
             +      R     H   +   V    G   Q   +     L   R     L+       TGYALLCVGFPTSD+EVETQDEDE            
Subjt:  LSDYKLFRVLGIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAG-----TGYALLCVGFPTSDVEVETQDEDE------------

Query:  ---ERDDYALELAMADE
           ERDDYALELAM DE
Subjt:  ---ERDDYALELAMADE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGACGTTCTTCTTCCCTGCACTTCCTTCCGTTCCGTAAATCTGAAGCCGGAATCTTTCCGGAGATTTCTCTCGACAAATCGGAACCGTCTCTTTCCCGACATCTTGAA
ATGCCGCCGAAAAACGACCTCAACTGAGCTCCAGGCAGCTGTCGACGTCGCCGCTCGGACTGACAACGGTTATCCTTCAATTCCGACTCATAAGGTCACCGTTCACGATA
GGGAGAGAGGCGTTGTTCATGAGTTCGTTGTTCCTGAGAATCGATATAACGCGTTCCTCCTCGGTTACAGATTGTATGATCTGTCTGATTATAAATTGTTTAGAGTTTTG
GGAATTCGTTGGGAATTCGAAGTTCACAACATCTTTTCACTTTTAGTGGTTATGACTTATTGTGGCGTGGGTGATCAATTTTGCAGGATCAGTACATATTGCACACTGCC
GAAGCTCAGAGCATATCTCTTCCATTTGCTTGCAGGCACGGGCTATGCACTTCTTTGCGTAGGTTTTCCAACCTCAGATGTTGAAGTAGAAACTCAAGATGAGGATGAGG
AGAGAGATGACTATGCTCTAGAGTTGGCCATGGCTGATGAGTAA

mRNA sequence

Show/hide mRNA sequence

CATATAACTGCTTCCAATCTTTGCCGATTACGTTATCTCATCACTGCACCTTCACACAACTGAACTCACTCGCCGGAGCTTCAAAATTCAACCTTAACTATGGACGTTCT
TCTTCCCTGCACTTCCTTCCGTTCCGTAAATCTGAAGCCGGAATCTTTCCGGAGATTTCTCTCGACAAATCGGAACCGTCTCTTTCCCGACATCTTGAAATGCCGCCGAA
AAACGACCTCAACTGAGCTCCAGGCAGCTGTCGACGTCGCCGCTCGGACTGACAACGGTTATCCTTCAATTCCGACTCATAAGGTCACCGTTCACGATAGGGAGAGAGGC
GTTGTTCATGAGTTCGTTGTTCCTGAGAATCGATATAACGCGTTCCTCCTCGGTTACAGATTGTATGATCTGTCTGATTATAAATTGTTTAGAGTTTTGGGAATTCGTTG
GGAATTCGAAGTTCACAACATCTTTTCACTTTTAGTGGTTATGACTTATTGTGGCGTGGGTGATCAATTTTGCAGGATCAGTACATATTGCACACTGCCGAAGCTCAGAG
CATATCTCTTCCATTTGCTTGCAGGCACGGGCTATGCACTTCTTTGCGTAGGTTTTCCAACCTCAGATGTTGAAGTAGAAACTCAAGATGAGGATGAGGAGAGAGATGAC
TATGCTCTAGAGTTGGCCATGGCTGATGAGTAAACTAAGGGTCCTAGAAGATCTATGGACTGAGAAATGAATGTAAGAAAAGAATCCTGTAGAGGAGCATTACTTTGCTC
AACTTCATCTGCTTTCTTTATTTGTATGGTTTATGACTGTTAATATCATAGGAGAATGAAACAATTACCCTAATGTTCTTTTGTCACTAAGCTTCTCTTTTTTTTCCTGG
TTGATGGGAAGTTTGTGTAATTCTTGAACACTAAAAATGAAGGCAGTTTATTTTGGAGGAATGCATATACTCTTGATGGGGGAAGGGATAGTTTAGTTTTAGAGAATCTC
AAATCAATTATTTGAAGTGCCAGGTT

Protein sequence

Show/hide protein sequence

MDVLLPCTSFRSVNLKPESFRRFLSTNRNRLFPDILKCRRKTTSTELQAAVDVAARTDNGYPSIPTHKVTVHDRERGVVHEFVVPENRYNAFLLGYRLYDLSDYKLFRVL
GIRWEFEVHNIFSLLVVMTYCGVGDQFCRISTYCTLPKLRAYLFHLLAGTGYALLCVGFPTSDVEVETQDEDEERDDYALELAMADE

Lsi05G011580 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome