; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G011710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G011710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionprotein RALF-like 9
Genome locationchr05:19647317..19647799
RNA-Seq ExpressionLsi05G011710
SyntenyLsi05G011710
Gene Ontology termsNA
InterPro domainsIPR008801 - Rapid ALkalinization Factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650705.1 hypothetical protein Csa_010421 [Cucumis sativus]2.5e-1057.89Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN
        PGCS  HPELC+   ANPYQRGCN+I+RCR GN I+D +E+  ++ DA   P++SPN
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN

XP_022159360.1 uncharacterized protein LOC111025777 [Momordica charantia]8.9e-0860.42Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDA
        PGCS  HPELC+   ANPY+RGC  I+RCRGG+ I+DD E ++V+ DA
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDA

XP_022961577.1 protein RALF-like 9 [Cucurbita moschata]6.8e-0847.14Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEKIVVDNDA-------------LSGPAVSPN
        CS  HP+LC+  PANPYQRGCN I+RCRG   + I+D+DE+ + +ND               S PA+SPN
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEKIVVDNDA-------------LSGPAVSPN

XP_023543631.1 auxin-induced in root cultures protein 12-like [Cucurbita pepo subsp. pepo]4.9e-0666.67Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIV
        PGCS KHP LC+   ANPY+RGCN IN+CRGG  +V
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIV

XP_023546462.1 protein RALF-like 9 [Cucurbita pepo subsp. pepo]1.4e-0845.95Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEK----------IVVDNDA----LSGPAVSPNANY
        CS  HP+LC+++PANPYQRGCN I+RCRG   + I+D+DE+           ++DND      S PA+SPN  +
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEK----------IVVDNDA----LSGPAVSPNANY

TrEMBL top hitse value%identityAlignment
A0A0A0L8B1 Uncharacterized protein1.2e-1057.89Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN
        PGCS  HPELC+   ANPYQRGCN+I+RCR GN I+D +E+  ++ DA   P++SPN
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN

A0A2Z6M3N7 Uncharacterized protein3.1e-0649.12Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN
        PGCS  HPELC+ +PANPY RGC    RCRGG     ++E      +A+S P  +PN
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPN

A0A6J1C8U5 uncharacterized protein LOC1110084959.0e-0662.22Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVD
        PGCS KHP LC+   AN YQRGC+ INRCR  +YI D +EKI  D
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVD

A0A6J1DYH7 uncharacterized protein LOC1110257774.3e-0860.42Show/hide
Query:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDA
        PGCS  HPELC+   ANPY+RGC  I+RCRGG+ I+DD E ++V+ DA
Subjt:  PGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDA

A0A6J1HAJ8 protein RALF-like 93.3e-0847.14Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEKIVVDNDA-------------LSGPAVSPN
        CS  HP+LC+  PANPYQRGCN I+RCRG   + I+D+DE+ + +ND               S PA+SPN
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCRG--GNYIVDDDEKIVVDNDA-------------LSGPAVSPN

SwissProt top hitse value%identityAlignment
A8MRD4 Protein RALF-like 78.1e-0453.33Show/hide
Query:  LPGCSAKHPELCQRVPANPYQRGCNKINRC
        +PGC++K+P+ C +VPAN Y RGC    RC
Subjt:  LPGCSAKHPELCQRVPANPYQRGCNKINRC

Q3ECL0 Protein RALF-like 91.7e-0666.67Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCRGG
        C   HP  C++  ANPYQRGC KINRCRGG
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCRGG

Arabidopsis top hitse value%identityAlignment
AT1G23147.1 RALF-like 39.8e-0551.52Show/hide
Query:  MLPGCSAKHPELC-QRVPANPYQRGCNKINRCR
        ++ GC  K+P+ C  + PANPY+RGC KI RC+
Subjt:  MLPGCSAKHPELC-QRVPANPYQRGCNKINRCR

AT1G60625.1 RALF-like 61.3e-0446.88Show/hide
Query:  MLPGCSAKHPELCQRVPANPYQRGCNKINRCR
        ++PGCS+K+P+ C ++PA  Y RGC    RC+
Subjt:  MLPGCSAKHPELCQRVPANPYQRGCNKINRCR

AT1G60815.1 RALF-like 75.7e-0553.33Show/hide
Query:  LPGCSAKHPELCQRVPANPYQRGCNKINRC
        +PGC++K+P+ C +VPAN Y RGC    RC
Subjt:  LPGCSAKHPELCQRVPANPYQRGCNKINRC

AT1G61566.1 ralf-like 91.2e-0766.67Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCRGG
        C   HP  C++  ANPYQRGC KINRCRGG
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCRGG

AT2G22055.1 RALF-like 152.8e-0453.57Show/hide
Query:  CSAKHPELCQRVPANPYQRGCNKINRCR
        C   HP  C++  ANPY+RGC  I RCR
Subjt:  CSAKHPELCQRVPANPYQRGCNKINRCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCCGGGATGTAGCGCAAAACATCCAGAACTTTGTCAAAGAGTTCCTGCCAATCCATATCAAAGAGGTTGTAACAAGATCAATCGTTGCAGAGGAGGAAATTATAT
CGTAGACGATGACGAGAAAATTGTTGTTGACAATGATGCATTGAGTGGTCCAGCAGTGAGTCCTAATGCAAATTATATTTTTCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTCCGGGATGTAGCGCAAAACATCCAGAACTTTGTCAAAGAGTTCCTGCCAATCCATATCAAAGAGGTTGTAACAAGATCAATCGTTGCAGAGGAGGAAATTATAT
CGTAGACGATGACGAGAAAATTGTTGTTGACAATGATGCATTGAGTGGTCCAGCAGTGAGTCCTAATGCAAATTATATTTTTCATTGA
Protein sequenceShow/hide protein sequence
MLPGCSAKHPELCQRVPANPYQRGCNKINRCRGGNYIVDDDEKIVVDNDALSGPAVSPNANYIFH