CuGenDBv2

Gene ID	Lsi05G011890
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Sterol regulatory element-binding protein cleavage-activating protein, putative
Genome location	chr05:19794640..19795194
RNA-Seq Expression	Lsi05G011890
Synteny	Lsi05G011890
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR021855 - PAM68-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

TYK23016.1 putative Sterol regulatory element-binding protein cleavage-activating protein [Cucumis melo var. makuwa]

1.1e-84

90.27

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Query:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        MK+  CSFRQALLL KPPP NQRT  INDS ITKN SNFTTTSRGQVQVNAKGFTGSPATAK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAF
Subjt:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

XP_004150568.1 uncharacterized protein PAM68-like [Cucumis sativus]

7.9e-78

83.87

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Query:  MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILA
        MK+L CSF QALLLS PPPWNQRT  IN S IT NL+NFT T SRGQVQVNAKGFT SP TAK+RET A+      NNNEDDDDEIPEAVYSRIITRILA
Subjt:  MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILA

Query:  FVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        FVG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE  R
Subjt:  FVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

XP_008439311.1 PREDICTED: uncharacterized protein PAM68-like [Cucumis melo]

1.8e-85

90.81

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Query:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPATAK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAF
Subjt:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

XP_022140980.1 uncharacterized protein PAM68-like [Momordica charantia]

2.1e-78

80.43

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Query:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV
        MKAL+CS+RQAL LS+PPPW  R+RINDS ITKNL+N +  +RG V+VNAKGFTG+PATAK+RE AA+K+SGQNN++ DDDDEI EAV +RIITRILAFV
Subjt:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV

Query:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGV LLKIF+ IKEQ +WDVPIWLPF TTFLTFGAST+GIAYGTLS SLDPEK+GSLFGWEEAQKNWVEMWKEEDEASR
Subjt:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

XP_038877436.1 uncharacterized protein PAM68-like [Benincasa hispida]

6.5e-88

90.76

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Query:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV
        MKALVCSF QALLLSKPPPWNQR+RINDS ITK LSNFT  SRGQVQVNAKGF+GSP+TAKDRE  AKKLSGQNN  EDDDDEIPEAVYSRIITRILAFV
Subjt:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV

Query:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGVTLLKIFQAIKEQN+WDVPIWLPF TTFLTFGASTMGIAYGTLSTSLDPEKKGS+FGWEEAQKNWVEMWKEEDE +R
Subjt:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LLM4 Uncharacterized protein

3.8e-78

83.87

Show/hide

Query:  MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILA
        MK+L CSF QALLLS PPPWNQRT  IN S IT NL+NFT T SRGQVQVNAKGFT SP TAK+RET A+      NNNEDDDDEIPEAVYSRIITRILA
Subjt:  MKALVCSFRQALLLSKPPPWNQRTR-INDSIITKNLSNFT-TTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILA

Query:  FVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        FVG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE  R
Subjt:  FVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

A0A1S3AZ57 uncharacterized protein PAM68-like

8.5e-86

90.81

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Query:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPATAK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAF
Subjt:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

A0A5A7STB5 Putative Sterol regulatory element-binding protein cleavage-activating protein

8.5e-86

90.81

Show/hide

Query:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        MK+  CSFRQALLL KPPP NQRT  INDS ITKNLSNFTTTSRGQVQVNAKGFTGSPATAK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAF
Subjt:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

A0A5D3DHC5 Putative Sterol regulatory element-binding protein cleavage-activating protein

5.5e-85

90.27

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Query:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        MK+  CSFRQALLL KPPP NQRT  INDS ITKN SNFTTTSRGQVQVNAKGFTGSPATAK+RETAAK LSGQ NNNEDDDDEIPEAVYSRIITRILAF
Subjt:  MKALVCSFRQALLLSKPPPWNQRT-RINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        VG+PMAFGVTLLKIFQAIKEQN+WDVPIW+PFFTTFLTFGASTMGIAYGTLSTSLDPEKKGS+ GWEEAQKNWVEMWKEEDE SR
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

A0A6J1CGP3 uncharacterized protein PAM68-like

1.0e-78

80.43

Show/hide

Query:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV
        MKAL+CS+RQAL LS+PPPW  R+RINDS ITKNL+N +  +RG V+VNAKGFTG+PATAK+RE AA+K+SGQNN++ DDDDEI EAV +RIITRILAFV
Subjt:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFV

Query:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR
        GVPMAFGV LLKIF+ IKEQ +WDVPIWLPF TTFLTFGAST+GIAYGTLS SLDPEK+GSLFGWEEAQKNWVEMWKEEDEASR
Subjt:  GVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

SwissProt top hits

e value

%identity

Alignment

O49668 Protein PAM68, chloroplastic

4.3e-18

36.96

Show/hide

Query:  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFG
        KGF   P  T K ++      S +++++ED+DD+          IPE V +R+I+R+   VG+P+  G+     F  +K     DVP W+PF  +F+ FG
Subjt:  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFG

Query:  ASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWK
         +  G++YG +S+S DP ++GSL GW EA+KNW   W+
Subjt:  ASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWK

Q9LTD9 Uncharacterized protein PAM68-like

2.9e-30

41.11

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Query:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        M+AL+CS R  L LS       +T+ ++    K L  N       ++    KGF  S  + K          G+ + + +DD  IP+ V+ R++ RI+  
Subjt:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE
        VG P+  GV +LK+ + +K++N+WDVP+W+P+ TT +TFG+S +GIAYG+LST+LDP K  SLFG +EA++NWVEMWKE+
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE

Arabidopsis top hits

e value

%identity

Alignment

AT4G19100.1 Protein of unknown function (DUF3464)

3.1e-19

36.96

Show/hide

Query:  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFG
        KGF   P  T K ++      S +++++ED+DD+          IPE V +R+I+R+   VG+P+  G+     F  +K     DVP W+PF  +F+ FG
Subjt:  KGFTGSP-ATAKDRETAAKKLSGQNNNNEDDDDE----------IPEAVYSRIITRILAFVGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFG

Query:  ASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWK
         +  G++YG +S+S DP ++GSL GW EA+KNW   W+
Subjt:  ASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWK

AT5G52780.1 Protein of unknown function (DUF3464)

2.0e-31

41.11

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Query:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF
        M+AL+CS R  L LS       +T+ ++    K L  N       ++    KGF  S  + K          G+ + + +DD  IP+ V+ R++ RI+  
Subjt:  MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNL-SNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAF

Query:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE
        VG P+  GV +LK+ + +K++N+WDVP+W+P+ TT +TFG+S +GIAYG+LST+LDP K  SLFG +EA++NWVEMWKE+
Subjt:  VGVPMAFGVTLLKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAAGCCCTAGTGTGTTCCTTTCGCCAAGCTCTCCTCCTCTCGAAGCCTCCGCCATGGAATCAAAGAACCCGAATCAACGACTCAATAATCACGAAGAATCTCAGCAA
TTTCACAACAACATCCAGAGGCCAAGTCCAAGTAAACGCCAAGGGCTTCACTGGTTCTCCGGCGACAGCGAAAGACAGAGAAACCGCTGCGAAAAAGCTTTCCGGCCAAA
ACAACAACAACGAAGACGACGACGATGAAATTCCAGAAGCCGTATACAGCAGGATTATAACGAGAATATTAGCTTTCGTAGGAGTTCCGATGGCCTTCGGTGTGACATTG
CTGAAAATTTTTCAGGCGATCAAGGAACAAAACATTTGGGATGTGCCGATTTGGCTGCCATTTTTTACGACTTTCTTGACATTCGGAGCTTCGACGATGGGAATTGCTTA
CGGGACGTTATCGACGAGTTTGGATCCGGAGAAGAAAGGATCTCTGTTCGGATGGGAGGAGGCGCAGAAGAATTGGGTTGAAATGTGGAAGGAGGAAGATGAAGCCAGTC
GCTGA

mRNA sequence

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Protein sequence

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MKALVCSFRQALLLSKPPPWNQRTRINDSIITKNLSNFTTTSRGQVQVNAKGFTGSPATAKDRETAAKKLSGQNNNNEDDDDEIPEAVYSRIITRILAFVGVPMAFGVTL
LKIFQAIKEQNIWDVPIWLPFFTTFLTFGASTMGIAYGTLSTSLDPEKKGSLFGWEEAQKNWVEMWKEEDEASR

Lsi05G011890 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome