CuGenDBv2

Gene ID	Lsi05G012200
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Genome location	chr05:20099371..20107597
RNA-Seq Expression	Lsi05G012200
Synteny	Lsi05G012200
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003697 - single-stranded DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR008806 - RNA polymerase III Rpc82, C -terminal IPR013197 - RNA polymerase III subunit RPC82-related, helix-turn-helix IPR036388 - Winged helix-like DNA-binding domain superfamily IPR039748 - DNA-directed RNA polymerase III subunit RPC3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6574180.1 DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-263

88.7

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRPIPDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+ +Q+SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

XP_022945853.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]

5.9e-264

88.7

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRPIPDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+M+Q+SGDADGIILWRANFDEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

XP_022968436.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]

5.0e-263

88.7

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRPIPDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+M+Q+SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSL+NI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+T+PR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

XP_023541704.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]

1.7e-263

88.89

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRP PDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+M+Q+SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+TIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

XP_038878061.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida]

3.6e-277

93.87

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        MVMTQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+N+LHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKL KDKDCEELLEGLLQNGRLSMEQMVERAQS     NRPIPD+V DSL KLL AHFVERCPAPEPSLSPKVEEQPPP+KRGAKAAKI EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
        ETLEQR+VESARPMEVLRFSMGDTNT+A KSEH+SQISGQKRKHDDLEMVQDSGDAD +ILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLS+LGCPGMDD++INLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDSSFVDKNEAPKILYR+WKDEYLYMEKVALT+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPL KRF+RL+ 
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VRGLLQSSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBF3 DNA-directed RNA polymerase III subunit RPC3

4.8e-259

88.31

Show/hide

Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTELT SQVNNSLLILIQHNCVQAFT VTEGEFGDAP  DT YLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KF+AIAS+KL +DK+C+ELLEGLLQNGRLSMEQ+VERA+S     N PI DVV DSL KLL AHFVERCPAPEP+LSPKVEE PPPRKRGAKAAKI EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
        ETLEQRL+E+ARP+EVLRFSMGDTN +A KSEHHSQISGQKRKHDDLE+ QDSGDADG ILWRAN+DEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASL+ALGCPGMDD+KINLR+IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDSSFVDKNEAPKILYR+WKDEYLYMEKVALT+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+EENKELLSLP DN N+PL K+ +   N
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSL+KLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

A0A1S3AYY3 DNA-directed RNA polymerase III subunit RPC3

1.3e-261

88.12

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Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTELT SQVNNSLLILIQHNCVQAFT VTEGEFGDAP  DTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIAS+KL +DK+C+ELLEGLLQNGRLSMEQMVERA+S     NRPIPDVV DSL KLL AHFVERCPAPEP+LSPKVEEQPPPRKRGAKAAKIFEVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
        ETLEQRL+E+ARP+EVLRFSMGDTN +A KSEH+SQISGQKRKHD+LE+ QDSG ADG ILWRAN+DEFIRCLRHKAC+EHVRSQFDDGVVNVLSA LEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASL+ALGCPGMDD+KINLR+I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDSSFVDKNEAPKILYR+WKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR A+E+EENKELLSLP DN N+PL K+ +    
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSL+KLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

A0A6J1CHB3 DNA-directed RNA polymerase III subunit RPC3

2.8e-259

89.46

Show/hide

Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQ GIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL SSQVNNSLLILIQHNCVQAFT+VTEGEFGDAP  DTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLA+ASEKLEKDK+CEELLEGLLQNGRLSMEQ+VERA+S     NRPIPDVV +SL KLLTAHFVERCPAPEP LS +VEEQPPP+KRGAKAAKI EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
        ETLEQRLV  ARPMEVLRFSM +TNT+A KSE    ISGQKRKHD+LE VQ+SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEK VKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLSALGCPGMDD+KINLRKIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDSSFVDKNEAPKILYR+WKDEYLYMEKVALT PRHSLCLLWRVD+YNLWEHVLDEMYHASLNLQLRQAYEME++KELLSLPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

A0A6J1G256 DNA-directed RNA polymerase III subunit RPC3

2.9e-264

88.7

Show/hide

Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRPIPDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+M+Q+SGDADGIILWRANFDEF+RCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSLDNI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

A0A6J1HUV1 DNA-directed RNA polymerase III subunit RPC3

2.4e-263

88.7

Show/hide

Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS
        M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILIQHNCVQAFTAVTEGEFGDAP ADTQYLALF+NILHRMRFS
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFS

Query:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP
        KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQ++ERA+S     NRPIPDVV +SL KLL AHFVERCPAPEP+LSP+VEEQPPPRKRGAKAAK+ EVP
Subjt:  KFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR----NRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVP

Query:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
         TLEQRLVESARPMEV+RFS+G+TNT+A +SEH+S ISGQKRK  DL+M+Q+SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDG VNVLSAILEA
Subjt:  ETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
        TRSSEKIVKTEITVPLSL+NI+EEVMKNEVGRSMTLDRVEASLSALGC GM+D+KINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK

Query:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN
        ISDS+FVDKNEAPKILYR+WKDEYLYMEKVA+T+PR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEME++KELL+LPPD R  PL+KR+NRLRN
Subjt:  ISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRN

Query:  VRGLLQSSLLKLDDALMLFHDF
        VR LL+SSLLKLDDALMLFHDF
Subjt:  VRGLLQSSLLKLDDALMLFHDF

SwissProt top hits

e value

%identity

Alignment

Q2TBL4 DNA-directed RNA polymerase III subunit RPC3

4.6e-25

25.45

Show/hide

Query:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF
        MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +LIQHN V          +        +Y A    +L  +R+ ++
Subjt:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF

Query:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE
        +  A + L  D   E ++E LL NG+++M  +V++   R    + D        V ++  +L+  HFV+RCP    + +      PP          ++ 
Subjt:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE

Query:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL
        VP+     L+   +     R S  +  T   K++   Q +      D+ E + D G     I W+AN D F +  R +A +  V ++ D     ++  +L
Subjt:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL

Query:  EATRSSEKIVKT--EITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRF
           R SE    +    T PLS + IF        + K  + + +TL  D     +   G  G   + INL K +       +ES+V +R+G    R+FR 
Subjt:  EATRSSEKIVKT--EITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRF

Query:  LSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL
        + +   L E +++ D + +   EA  +LY+M  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R+ +E +ENK LL
Subjt:  LSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL

Q55FJ5 DNA-directed RNA polymerase III subunit rpc3

1.5e-15

20.53

Show/hide

Query:  YGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LTSSQVNNSLLILIQHNCV---QAFTAVTEGEF-----GDAPNADTQYLALFTNI
        Y  K A+ I+   FG+ V KV E L+++G  + +++ +       LT  ++   LL+LIQHN V   +    +T+ E      G+   +D+ Y A+  N 
Subjt:  YGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LTSSQVNNSLLILIQHNCV---QAFTAVTEGEF-----GDAPNADTQYLALFTNI

Query:  LHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSRNR--------PIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKR
        +HR+RF KF+     K  K  +   +LE L+ +GRL M+ ++++A    R         I    +D+ +KL+   F+ R P P P     V +Q      
Subjt:  LHRMRFSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSRNR--------PIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKR

Query:  GAKAAKI--------------------FEVPET------LEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQIS--------------------GQKRK
          +A K+                    F +P            +  SA   E L    G ++T    S+     +                    G+KRK
Subjt:  GAKAAKI--------------------FEVPET------LEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQIS--------------------GQKRK

Query:  HDDLEMVQDSGDADGI---------------------------------------------------------------------ILWRANFDEFIRCLR
          D+    D  + D +                                                                     +LW  N+++FI   +
Subjt:  HDDLEMVQDSGDADGI---------------------------------------------------------------------ILWRANFDEFIRCLR

Query:  HKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIFEEVMKN-EVGRSMTLDRVEASLSALGC--PGM----------------DDFK
         KAC + V  + +     + +A+++  + S +  +  +T  +  +NI EE  ++ +  + M   ++E  LS +    P M                  ++
Subjt:  HKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIFEEVMKN-EVGRSMTLDRVEASLSALGC--PGM----------------DDFK

Query:  INLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS------LCLLWRVDRYN
        +N+  II   +   VESI+ +++G +  R+F+ L     L+E ++I++ + +  NE   +L+ M +   + +++    IPR S         L+ VD   
Subjt:  INLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS------LCLLWRVDRYN

Query:  LWEHVLDEMYHASLNLQLRQAYEMEENKE----LLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF
        +     ++++ A  N + R   E+E +K+    L  L  D   E   K + +   +   L + +L LD+ L+  + F
Subjt:  LWEHVLDEMYHASLNLQLRQAYEMEENKE----LLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF

Q5XIL3 DNA-directed RNA polymerase III subunit RPC3

9.6e-23

24.04

Show/hide

Query:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF
        MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI HN V          +        +Y A  + +L  +R+ ++
Subjt:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF

Query:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE
          I + K       E ++E LL NG+++M  +V++   R    + D        V ++  +L   HFV+RCP    + S      PP          ++ 
Subjt:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE

Query:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL
        VP              ++     G     + +       + + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D     ++  +L
Subjt:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL

Query:  EATRSSEKIVKT--EITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRF
           R SE    +    T PLS + IF        + K  + + +TL  D     +   G  G   + INL K +       +ES++ +R+G    R+FR 
Subjt:  EATRSSEKIVKT--EITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRF

Query:  LSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL
        + +   L E +++ D + +   EA  +LY+M  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R+ +E +ENK LL
Subjt:  LSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL

Q9BUI4 DNA-directed RNA polymerase III subunit RPC3

1.3e-24

Show/hide

Query:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF
        MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +L+QHN V          +        +Y A  + +L  +R+ ++
Subjt:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF

Query:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE
        +   ++ L  D   E ++E LL NG+L+M  +V++   R    + D        V ++  +L   HFV+RCP+   + +      PP          ++ 
Subjt:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE

Query:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFD---DGVVNVLS
        VP+     L+   +     R S  +      K++        K   D+ E + D G     I W+AN D F +  R +A +  V ++ D     +V  + 
Subjt:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFD---DGVVNVLS

Query:  AILEATRSSEKIVKTEITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFR
         + E T SS        T PLS + IF        + K  + + +TL  D     +   G  G   + INL K +       +ES+V +R+G    R+FR
Subjt:  AILEATRSSEKIVKTEITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFR

Query:  FLSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL
         + +    +E +++ D + +   EA  +LY+M  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R+ +E +ENK LL
Subjt:  FLSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL

Q9D483 DNA-directed RNA polymerase III subunit RPC3

4.3e-23

24.54

Show/hide

Query:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF
        MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI HN V          +        +Y A  + +L  +R+ ++
Subjt:  MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKF

Query:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE
          I + K       E ++E LL NG+++M  +V++   R    + D        V ++  +L   HFV+RCP    + S      PP          ++ 
Subjt:  LAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSR-NRPIPD-------VVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFE

Query:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL
        VP+     L+   +     R S  +  T   K++       + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D     ++  +L
Subjt:  VPETLEQRLVESARPMEVLRFSMGDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL

Query:  EATRSSEKIVKTEITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS
          +  +        T PLS + IF        + K  + + +TL  D     +   G  G   F INL K +       +ES++ +R+G    R+FR + 
Subjt:  EATRSSEKIVKTEITVPLSLDNIFE------EVMKNEVGRSMTL--DRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS

Query:  KTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL
        +   L E +++ D + +   EA  +LY+M  + ++ ++++  T P H+      L+ V+  +    +L   Y +  NL  R+ +E +ENK LL
Subjt:  KTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHS---LCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELL

Arabidopsis top hits

e value

%identity

Alignment

AT3G49000.1 RNA polymerase III subunit RPC82 family protein

7.3e-127

46.53

Show/hide

Query:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMR
        M M+++GI YA+HIIT  FG++V+KVCE LLRKGPL+ R + R  E  +  ++V + L +LIQHNCVQAF+   E   G    A  QY+ LF NILHR+R
Subjt:  MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMR

Query:  FSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSRNRPI-PDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVPE
        ++KF  I +E+L  D  C  +L+GLL NGRL++ Q +ER +     I  + ++DSL KL+ A FVER P+PEP L  K  E+ P ++RGAKAAKI + PE
Subjt:  FSKFLAIASEKLEKDKDCEELLEGLLQNGRLSMEQMVERAQSRNRPI-PDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVPE

Query:  TLEQRLVESARPMEVLRFSM-GDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA
        TLE+++VE+A P++ +RF +  + ++++  ++ +S I+  KRK  D+    D+ D+   ++WR NF+EFI  LRHKAC+E V+ + D+G   VL A+LE 
Subjt:  TLEQRLVESARPMEVLRFSM-GDTNTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEA

Query:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGM----------DDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS
         RS EK VKT+ + P+S+ +I+EEV+K E GR+M  +RVEA L  L               D + ++ + II  AQ DE+E++V++RYG++A+RMFR+LS
Subjt:  TRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSMTLDRVEASLSALGCPGM----------DDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLS

Query:  KTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIP-RHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNE
        + G  VET+KI+D++  +K + P+ L +MWKD YL+M+K+A+T P  ++  LLW+V++  +   +LDEMYHASLNL LR A+E+E  KELL LP D    
Subjt:  KTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIP-RHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNE

Query:  PLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF
        PLK+R  +++  R LL S++ KLDDA+MLFHDF
Subjt:  PLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF

Sequences

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CDS sequence

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ATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACTGCACACTTCGGAAATCTCGTCGCTAAAGTTTGCGAAACCCTGCTCCGAAAGGGACCTCTGAC
GCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAG
GTGAGTTTGGAGACGCACCCAATGCTGATACACAGTACTTGGCATTGTTTACTAATATACTTCATCGTATGAGATTTTCCAAATTCTTGGCAATTGCTTCGGAAAAGCTT
GAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTGCTGCAGAATGGTAGGCTTTCAATGGAACAAATGGTTGAAAGAGCACAGTCAAGAAACCGTCCTATTCCAGA
TGTTGTACAAGACAGTCTATCTAAACTTTTGACCGCCCATTTTGTTGAACGTTGTCCAGCCCCTGAACCAAGCCTTTCACCCAAAGTTGAAGAACAGCCACCTCCTAGAA
AAAGAGGTGCTAAGGCTGCCAAGATATTTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAATCAGCACGTCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACC
AACACAGATGCTGGAAAGAGTGAACATCATTCACAAATTTCTGGACAGAAGCGCAAGCACGATGATCTGGAGATGGTACAAGATTCTGGAGATGCCGATGGTATTATTCT
TTGGCGTGCTAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTCAGATCACAGTTTGATGATGGGGTGGTCAATGTCTTGAGTGCCATTT
TGGAGGCTACTAGAAGTTCTGAAAAAATTGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATTTGAGGAGGTAATGAAGAATGAAGTAGGGCGGAGTATG
ACCTTAGATCGTGTTGAAGCTTCCCTCTCTGCACTGGGTTGTCCGGGGATGGATGATTTTAAAATTAATTTACGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGA
GTCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGGATGTTCAGATTCCTGTCGAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTG
ATAAGAATGAGGCACCTAAAATTTTATATAGGATGTGGAAGGACGAGTACCTCTACATGGAGAAAGTAGCTCTAACGATACCTAGACATTCCCTATGCTTGTTGTGGAGA
GTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAATTTGCAGCTACGACAGGCTTATGAGATGGAAGAAAACAAAGAGCTTCTGAG
TCTTCCACCAGATAATCGCAACGAGCCACTCAAAAAACGATTTAACCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCGCTGCTGAAGCTTGACGATGCTCTAATGC
TTTTCCATGACTTCTAA

mRNA sequence

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GGATACTTGATGTCATAGACGCACAGCAATCTTAAAGAAGGCAATCATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACTGCACACTTCGGAAATC
TCGTCGCTAAAGTTTGCGAAACCCTGCTCCGAAAGGGACCTCTGACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATT
CTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAATGCTGATACACAGTACTTGGCATTGTTTACTAATATACTTCA
TCGTATGAGATTTTCCAAATTCTTGGCAATTGCTTCGGAAAAGCTTGAGAAAGATAAAGATTGTGAAGAACTTCTCGAGGGTCTGCTGCAGAATGGTAGGCTTTCAATGG
AACAAATGGTTGAAAGAGCACAGTCAAGAAACCGTCCTATTCCAGATGTTGTACAAGACAGTCTATCTAAACTTTTGACCGCCCATTTTGTTGAACGTTGTCCAGCCCCT
GAACCAAGCCTTTCACCCAAAGTTGAAGAACAGCCACCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATTTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGA
ATCAGCACGTCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACCAACACAGATGCTGGAAAGAGTGAACATCATTCACAAATTTCTGGACAGAAGCGCAAGCACGATG
ATCTGGAGATGGTACAAGATTCTGGAGATGCCGATGGTATTATTCTTTGGCGTGCTAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTC
AGATCACAGTTTGATGATGGGGTGGTCAATGTCTTGAGTGCCATTTTGGAGGCTACTAGAAGTTCTGAAAAAATTGTGAAAACAGAGATAACAGTTCCTTTATCATTGGA
TAACATATTTGAGGAGGTAATGAAGAATGAAGTAGGGCGGAGTATGACCTTAGATCGTGTTGAAGCTTCCCTCTCTGCACTGGGTTGTCCGGGGATGGATGATTTTAAAA
TTAATTTACGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAGTCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGGATGTTCAGATTCCTGTCGAAAACT
GGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCACCTAAAATTTTATATAGGATGTGGAAGGACGAGTACCTCTACATGGAGAA
AGTAGCTCTAACGATACCTAGACATTCCCTATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAATTTGC
AGCTACGACAGGCTTATGAGATGGAAGAAAACAAAGAGCTTCTGAGTCTTCCACCAGATAATCGCAACGAGCCACTCAAAAAACGATTTAACCGTTTGAGGAATGTCAGA
GGACTCCTGCAGTCGTCGCTGCTGAAGCTTGACGATGCTCTAATGCTTTTCCATGACTTCTAAATCAAGGATTTAGATTAGTGGGTTGATTGAGGAGTGTATATGGAGGA
TGCTTCTTTCAAACTTCGGAAGAAAAATTTTGGTTAGCAGTGTTTCCTTCCTTCTATTAGAATACAGAAATTTCATTGCCCTTATAAGTGTTGTTTGACTGAGGTTAATT
ATGGTGCATGGGGTATGGCTTTTCCT

Protein sequence

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MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPNADTQYLALFTNILHRMRFSKFLAIASEKL
EKDKDCEELLEGLLQNGRLSMEQMVERAQSRNRPIPDVVQDSLSKLLTAHFVERCPAPEPSLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLVESARPMEVLRFSMGDT
NTDAGKSEHHSQISGQKRKHDDLEMVQDSGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIFEEVMKNEVGRSM
TLDRVEASLSALGCPGMDDFKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRMWKDEYLYMEKVALTIPRHSLCLLWR
VDRYNLWEHVLDEMYHASLNLQLRQAYEMEENKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF

Lsi05G012200 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome