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Lsi05G012250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionActin depolymerizing factor
Genome locationchr05:20146208..20147191
RNA-Seq ExpressionLsi05G012250
SyntenyLsi05G012250
Gene Ontology termsGO:0030042 - actin filament depolymerization (biological process)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003779 - actin binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002108 - Actin-depolymerising factor homology domain
IPR017904 - ADF/Cofilin
IPR029006 - ADF-H/Gelsolin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033654.1 zinc finger CCHC domain-containing protein 9 [Cucumis melo var. makuwa]1.2e-4476.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

XP_008439227.1 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103484078 [Cucumis melo]1.2e-4476.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

XP_022141136.1 uncharacterized protein LOC111011601 [Momordica charantia]9.0e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        ANSASGMAVRDECKLKF+ELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIP DE                          SPDTS+VRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

XP_031738809.1 actin-depolymerizing factor 7 [Cucumis sativus]5.3e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF+AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

XP_038886312.1 uncharacterized protein LOC120076526 [Benincasa hispida]1.4e-4577.94Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        ANSASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

TrEMBL top hitse value%identityAlignment
A0A0A0LBE8 ADF-H domain-containing protein2.6e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF+AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

A0A1S3AY90 LOW QUALITY PROTEIN: uncharacterized protein LOC1034840785.7e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

A0A2G9HXM2 Actin depolymerizing factor2.8e-4485.32Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEM
        ANSASGMAV+D+CKLKFLELK KRNYRFIIFKIE+Q+VVVEKLG P+E Y+DF A++P+DESPDTSKVR KM+YASSKDRFKRELDGIQVELQATDPSEM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEM

Query:  SFDIIKARA
        SFDIIK RA
Subjt:  SFDIIKARA

A0A5A7SR44 Zinc finger CCHC domain-containing protein 95.7e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAVRDECKLKFLELK KRNYRFIIFKIENQEVVVEKLG PEETY+DF AAIPA+E                          SPDTSKVRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

A0A6J1CI48 uncharacterized protein LOC1110116014.4e-4576.47Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        ANSASGMAVRDECKLKF+ELK KRNYRFIIFKIENQEVVVEKLG PEETYEDF AAIP DE                          SPDTS+VRNKMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

SwissProt top hitse value%identityAlignment
P30175 Actin-depolymerizing factor4.2e-3761.59Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM
        ANS+SGMAV DECKLKF+ELK KRN+RFI+FKIE   Q+V VE+LG P E+Y+DF   +P +E                          SPDTS+VR+KM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM

Query:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF
        +YAS+KDRFKRELDGIQVELQATDPSEMS DIIKARAF
Subjt:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF

Q67ZM4 Actin-depolymerizing factor 71.3e-4167.41Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG P+ETY+DF A++PA+E                          SPD+S+VR KMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIK+RA
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA

Q7XSN9 Actin-depolymerizing factor 67.2e-3762.77Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIE--NQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM
        ANSASGMAV DECKLKF ELK+KR++RFI FKI+   Q+VVV++LG P +TY+DF A++PA E                          SPDTSKVR+KM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIE--NQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM

Query:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA
        +YASSKDRFKRELDGIQVELQATDPSEMS DI+KARA
Subjt:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA

Q8LFH6 Actin-depolymerizing factor 121.3e-3864.44Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAV DECKLKFLELK KRNYRFIIF+I+ Q+VVVEKLG P+E Y+DF   +P +E                          SPD+S+VR KMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA
        ASSKDRFKRELDGIQVELQATDPSEMS DIIK+RA
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA

Q9LQ81 Actin-depolymerizing factor 102.9e-3864.71Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM
        ANSASGM V DECKLKFLELK KRNYRFI+FKI+   Q+V+++KLG PEETYEDF  +IP DE                          SPDTS+VR+KM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM

Query:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR
        +YASSKDRFKRELDGIQVELQATDPSEMS DIIK R
Subjt:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR

Arabidopsis top hitse value%identityAlignment
AT1G01750.1 actin depolymerizing factor 112.1e-3964.71Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM
        ANSASGM V DECKLKFLELK KRNYRFI+FKI+   Q+V+++KLG PEETYEDF  +IP DE                          SPDTS+VR+KM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM

Query:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR
        +YASSKDRFKRELDGIQVELQATDPSEMS DIIK R
Subjt:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR

AT3G46000.1 actin depolymerizing factor 28.7e-3858.21Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAV D+CKLKF+ELK KR +R I++KIE+++V+VEKLG PE++Y+DFAA++PAD+                          SPDT+KVR+KM+Y
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR
        ASSKDRFKRELDGIQVELQATDP+EM  D+ K+R
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR

AT4G00680.1 actin depolymerizing factor 81.1e-3761.76Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM
        ANSASGM V DECK+KFLELK KR YRFI+FKI+   Q+V +EKLG PEETY+DF ++IP DE                          SPDTS+VR+KM
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIEN--QEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKM

Query:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR
        +YASSKDRFKRE++GIQVELQATDPSEMS DIIK R
Subjt:  VYASSKDRFKRELDGIQVELQATDPSEMSFDIIKAR

AT4G25590.1 actin depolymerizing factor 79.0e-4367.41Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAV DECKLKFLELK+KRNYRFIIF+I+ Q+VVVEKLG P+ETY+DF A++PA+E                          SPD+S+VR KMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA
        ASSKDRFKRELDGIQVELQATDPSEMSFDIIK+RA
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA

AT5G52360.1 actin depolymerizing factor 109.3e-4064.44Show/hide
Query:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY
        AN+ASGMAV DECKLKFLELK KRNYRFIIF+I+ Q+VVVEKLG P+E Y+DF   +P +E                          SPD+S+VR KMVY
Subjt:  ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADE--------------------------SPDTSKVRNKMVY

Query:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA
        ASSKDRFKRELDGIQVELQATDPSEMS DIIK+RA
Subjt:  ASSKDRFKRELDGIQVELQATDPSEMSFDIIKARA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGA
AGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTT
ATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTT
TAA
mRNA sequenceShow/hide mRNA sequence
GCGAACTCTGCATCTGGAATGGCTGTGAGGGATGAATGCAAGCTGAAATTTTTGGAGTTAAAAAACAAGAGGAACTATCGATTCATTATATTCAAGATTGAGAATCAAGA
AGTTGTTGTGGAGAAACTTGGATGCCCGGAAGAGACTTATGAAGATTTTGCTGCTGCTATTCCTGCTGATGAGTCACCTGACACATCAAAAGTGAGAAATAAGATGGTTT
ATGCAAGCTCCAAGGACAGATTCAAGAGGGAATTGGATGGAATTCAGGTGGAATTGCAAGCCACTGATCCTAGCGAAATGAGCTTTGACATAATCAAAGCTCGAGCTTTT
TAAGCTCAATTTTCCTCTCTCTTTTTTCTCTTTTTCTTCATCTTCATTTTTGAGACTAAGCATAATTAATGTTGTGACATTACTCTCACTTTCTTTTCCCCCCTTTTTTC
TTCTTTTTGTACCTTTTCATCTTTTTCAGAGCCT
Protein sequenceShow/hide protein sequence
ANSASGMAVRDECKLKFLELKNKRNYRFIIFKIENQEVVVEKLGCPEETYEDFAAAIPADESPDTSKVRNKMVYASSKDRFKRELDGIQVELQATDPSEMSFDIIKARAF