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Lsi05G012340 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012340
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTranscription factor LAF1-like isoform X2
Genome locationchr05:20198890..20199759
RNA-Seq ExpressionLsi05G012340
SyntenyLsi05G012340
Gene Ontology termsGO:0000494 - box C/D snoRNA 3'-end processing (biological process)
GO:0031167 - rRNA methylation (biological process)
GO:1990258 - histone glutamine methylation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0031428 - box C/D snoRNP complex (cellular component)
GO:0032040 - small-subunit processome (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0008649 - rRNA methyltransferase activity (molecular function)
GO:1990259 - histone-glutamine methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033637.1 transcription factor LAF1-like isoform X2 [Cucumis melo var. makuwa]5.9e-2573.56Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+E+  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
KGN57402.2 hypothetical protein Csa_009587 [Cucumis sativus]1.4e-2975.26Show/hide
Query:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWL  SD+NGG+SMEGSFDGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
XP_008439220.1 PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo]1.7e-2472.41Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+++  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
XP_011652772.1 LOW QUALITY PROTEIN: transcription factor LAF1 [Cucumis sativus]1.4e-2975.26Show/hide
Query:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWL  SD+NGG+SMEGSFDGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
XP_038879994.1 transcription factor LAF1-like [Benincasa hispida]1.5e-3178.26Show/hide
Query:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLSDINGGNSMEGSFDGEGGTASRDGYYGFEMLNWDLDFEGHISDGFAT
        KK + +LQDSKSRV  NRDP LE++G  GNEQRGS+PK LFAEWL DINGG+SMEGSFD EG TASR+G YGFEMLNWDLDFEG ISDGFAT
Subjt:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLSDINGGNSMEGSFDGEGGTASRDGYYGFEMLNWDLDFEGHISDGFAT
TrEMBL top hitse value%identityAlignment
A0A0A0L6I1 Uncharacterized protein6.6e-3075.26Show/hide
Query:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWL  SD+NGG+SMEGSFDGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
A0A1S3AY85 transcription factor LAF1-like isoform X48.3e-2572.41Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+++  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
A0A1S3AYA7 transcription factor LAF1-like isoform X38.3e-2572.41Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+++  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
A0A1S3AYW8 transcription factor LAF1-like isoform X18.3e-2572.41Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+++  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
A0A5D3DH52 Transcription factor LAF1-like isoform X22.9e-2573.56Show/hide
Query:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
        K +V  NRDP LE +GS G+E+  +RP+VLFAEWL  SDIN G+SMEGSFDGEG  T SR+G YGFEMLNWDLDFEGHISDGFATCD
Subjt:  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWL--SDINGGNSMEGSFDGEG-GTASRDGYYGFEMLNWDLDFEGHISDGFATCD
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGAAGAAAGTGGTCTCAGATTTGCAAGATTCGAAAAGTCGAGTTTTTCCGAATCGAGATCCGCAGTTGGAGGA
GGTGGGAAGTTTGGGAAATGAACAAAGGGGAAGCCGACCGAAGGTCTTGTTTGCAGAATGGCTTTCTGATATTAATGGTGGGAACTCCATGGAAGGAAGCTTTGATGGTG
AGGGAGGAACAGCAAGCAGAGACGGCTACTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATTAA
mRNA sequenceShow/hide mRNA sequence
TGAAGCAATAAAAACTTGGTGGAAAATCAAAGAAGAGACAGAGAGATGGGATGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGATTATGGTCACCTGAGGAAGA
TGAAAAGCTGAGAAGCTTTATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGAAGAAAGTGGTCTCAGATTTGCAAGATTCGAAAAGTCGAGTT
TTTCCGAATCGAGATCCGCAGTTGGAGGAGGTGGGAAGTTTGGGAAATGAACAAAGGGGAAGCCGACCGAAGGTCTTGTTTGCAGAATGGCTTTCTGATATTAATGGTGG
GAACTCCATGGAAGGAAGCTTTGATGGTGAGGGAGGAACAGCAAGCAGAGACGGCTACTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTG
ATGGCTTTGCAACTTGTGATTAA
Protein sequenceShow/hide protein sequence
MAMAAGPLSPLKLKKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLSDINGGNSMEGSFDGEGGTASRDGYYGFEMLNWDLDFEGHISDGFATCD