; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G012380 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012380
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionflap endonuclease GEN-like 2
Genome locationchr05:20223460..20225994
RNA-Seq ExpressionLsi05G012380
SyntenyLsi05G012380
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004520 - endodeoxyribonuclease activity (molecular function)
InterPro domainsIPR006084 - XPG/Rad2 endonuclease
IPR006085 - XPG, N-terminal
IPR029060 - PIN-like domain superfamily
IPR036279 - 5'-3' exonuclease, C-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004140848.1 flap endonuclease GEN-like 2 [Cucumis sativus]1.5e-8759.68Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCWIV+L +                                                        VAQ 
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY
        DANPQQ+CSLKRNKGSEFSLMIKEA+ALGLALGIPCLD + +A  Q  +L+  +L      S       +   FL             ++  + LGDSG+
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY

Query:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY
        VVCYEMDDIE +LGFGRNSMIT ALLLGSDYSQGVYGMGRESACQ+VKAVGD  VLQKI SEGL+ AKKG+NSKKQGLPKSGHG YM  CD+FSEVIDAY
Subjt:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY

Query:  LKPKCHSADSEAVTR
        LKPKCHSADSEAVTR
Subjt:  LKPKCHSADSEAVTR

XP_022140863.1 flap endonuclease GEN-like 2 [Momordica charantia]2.2e-8660.25Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCW+VQLQN                                                        VAQN
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLS--FLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        DAN QQ+ SLKRNKGSEFSLMIKEAKALGLALGIPCLDG+ +A  Q  +L+   L  G +   S +              F F    + R    + LGD 
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLS--FLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYEM DIERQLGFGRNSM+TLALLLGSDYSQGVYG+GRESACQIVKAVGD  VLQKIASEGLSF KKGKNSKKQGL KSG GQ +H CD F +VID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYLKPKCHSADS+AVTR
Subjt:  AYLKPKCHSADSEAVTR

XP_022968219.1 flap endonuclease GEN-like 2 [Cucurbita maxima]7.7e-8758.99Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCW+VQLQNV+                                                        +N
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        D N QQ+ SLKRN+GSEFSLMIKEAKALGLALGIPCLDG+ +   Q  +L+  +L  G +   S +              F F    + R    + LGD 
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYEMDDIERQLGFGRNSMI+LALLLGSDYSQGVYGMGRESACQIVK VGDS VLQKIASEGLSF KKGKNSKK GLP SG GQ+MH C++FS+VID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYL+PKCHSADS+AVTR
Subjt:  AYLKPKCHSADSEAVTR

XP_023541410.1 flap endonuclease GEN-like 2 [Cucurbita pepo subsp. pepo]1.3e-8659.31Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCW+VQLQNV+                                                        +N
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        D N QQ+ SLKRNKGSEFSLMIKEAKALGL LGIPCLDG+ +   Q  +L+  +L  G +   S +              F F    + R    + LGD 
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYEMDDIERQLGFGRNSMI LALLLGSDYSQGVYGMGRESACQIVKAVGDS VLQKIASEGLSF KKGKNSKK GL  SG GQYMH C++FS+VID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYL+PKCHSADS+AVTR
Subjt:  AYLKPKCHSADSEAVTR

XP_038890874.1 LOW QUALITY PROTEIN: single-strand DNA endonuclease 1 [Benincasa hispida]2.5e-9363.17Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN
        MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN                                                        VAQN
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY
        DANPQQ+CSLKRNKGSEFSLMIKEAKALGLALGIPCLDG+ +A  Q  +L+  +L      S       +   FL             ++  + LGD+G+
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY

Query:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY
        V+CYEMDDIER LGFGRNSMITLALLLGSDYSQGVYGMGRES+CQIVKAVGDS VLQKIASEGLSFAKKGKNSKKQGLPKSG GQYMH CDQ SEVIDAY
Subjt:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY

Query:  LKPKCHSADSEAVTR
        LKPKCHSADSE V R
Subjt:  LKPKCHSADSEAVTR

TrEMBL top hitse value%identityAlignment
A0A0A0L8N4 Uncharacterized protein7.5e-8859.68Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCWIV+L +                                                        VAQ 
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY
        DANPQQ+CSLKRNKGSEFSLMIKEA+ALGLALGIPCLD + +A  Q  +L+  +L      S       +   FL             ++  + LGDSG+
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGY

Query:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY
        VVCYEMDDIE +LGFGRNSMIT ALLLGSDYSQGVYGMGRESACQ+VKAVGD  VLQKI SEGL+ AKKG+NSKKQGLPKSGHG YM  CD+FSEVIDAY
Subjt:  VVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVIDAY

Query:  LKPKCHSADSEAVTR
        LKPKCHSADSEAVTR
Subjt:  LKPKCHSADSEAVTR

A0A1S3AY79 flap endonuclease GEN-like 2 isoform X21.3e-8458.04Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQL----------------------------------------------------------QNVA
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCWIVQL                                                          + VA
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQL----------------------------------------------------------QNVA

Query:  QNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        Q DANPQQ+CSLKRN GSEFSLMIKEA+ALGLALGIPCLD + +A  Q  +L+  +L      S       +   FL             ++  + LGDS
Subjt:  QNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYE+DDI+ +LGFGRNSMIT ALLLGSDYSQGVYGMGRESACQ+VKAVGD  VLQKI SEGL+ AKKGKNSKKQ LPKSG+GQY+  CD+FSEVID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYLKPKCHSADSEAV+R
Subjt:  AYLKPKCHSADSEAVTR

A0A1S3AYA2 flap endonuclease GEN-like 2 isoform X11.3e-8458.04Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQL----------------------------------------------------------QNVA
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCWIVQL                                                          + VA
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQL----------------------------------------------------------QNVA

Query:  QNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        Q DANPQQ+CSLKRN GSEFSLMIKEA+ALGLALGIPCLD + +A  Q  +L+  +L      S       +   FL             ++  + LGDS
Subjt:  QNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYE+DDI+ +LGFGRNSMIT ALLLGSDYSQGVYGMGRESACQ+VKAVGD  VLQKI SEGL+ AKKGKNSKKQ LPKSG+GQY+  CD+FSEVID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYLKPKCHSADSEAV+R
Subjt:  AYLKPKCHSADSEAVTR

A0A6J1CIZ7 flap endonuclease GEN-like 21.1e-8660.25Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCW+VQLQN                                                        VAQN
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQN--------------------------------------------------------VAQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLS--FLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        DAN QQ+ SLKRNKGSEFSLMIKEAKALGLALGIPCLDG+ +A  Q  +L+   L  G +   S +              F F    + R    + LGD 
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLS--FLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYEM DIERQLGFGRNSM+TLALLLGSDYSQGVYG+GRESACQIVKAVGD  VLQKIASEGLSF KKGKNSKKQGL KSG GQ +H CD F +VID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYLKPKCHSADS+AVTR
Subjt:  AYLKPKCHSADSEAVTR

A0A6J1HZ11 flap endonuclease GEN-like 23.7e-8758.99Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN
        MGVKN WDILESCKKTLPLHRLQNKRLCIDLSCW+VQLQNV+                                                        +N
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVA--------------------------------------------------------QN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS
        D N QQ+ SLKRN+GSEFSLMIKEAKALGLALGIPCLDG+ +   Q  +L+  +L  G +   S +              F F    + R    + LGD 
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVL--GQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDS

Query:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID
        G+VVCYEMDDIERQLGFGRNSMI+LALLLGSDYSQGVYGMGRESACQIVK VGDS VLQKIASEGLSF KKGKNSKK GLP SG GQ+MH C++FS+VID
Subjt:  GYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPKSGHGQYMHACDQFSEVID

Query:  AYLKPKCHSADSEAVTR
        AYL+PKCHSADS+AVTR
Subjt:  AYLKPKCHSADSEAVTR

SwissProt top hitse value%identityAlignment
Q17RS7 Flap endonuclease GEN homolog 13.9e-0924.8Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQ------------------------------NDANPQQLCS---LKRNKG--------
        MGV + W ILE  K+ +PL  L  K + +DLS W+ + Q V +                               +  P +L +    KRN+         
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQ------------------------------NDANPQQLCS---LKRNKG--------

Query:  -------SEFSLMIKEAKALGLALGIPCLDGMDASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMDDI
               S F  +++E   +   LGIP +    A     M ++L  G ++       +  +   FL        N      F +   D  +V CY M  I
Subjt:  -------SEFSLMIKEAKALGLALGIPCLDGMDASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMDDI

Query:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQK
        + +LG  R++++ LA+LLG DY  +GV G+G+E A ++++ +    +LQ+
Subjt:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQK

Q8W5R1 Single-strand DNA endonuclease 17.3e-5642.12Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDA------------------------------------------------------
        MGVKN WDILESCKK LPLH LQNK++C+DLSCW+VQ+ +  ++ A                                                      
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDA------------------------------------------------------

Query:  ----NPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMD------ASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVV
            N     SL+RNKGSEFS MIKEAK LG+ALGIPCLDG++      ASL ++ L     G +   S                F F    + R  F+ 
Subjt:  ----NPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMD------ASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVV

Query:  KLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAK--KGKNSKKQ---GLPKSGH---GQ
          G+ GYV+CYEM+DIE+ LGFGRNS+I+LA+LLGSDYS GV G G E+AC++VK+VGD+ +L +I S G+   +  KGKNS  +     PK+     G 
Subjt:  KLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAK--KGKNSKKQ---GLPKSGH---GQ

Query:  YMHACDQFSEVIDAYLKPKCHSADSEAVTR
           +  QF +VI+AYL+PKCHS DSEAV R
Subjt:  YMHACDQFSEVIDAYLKPKCHSADSEAVTR

Q9ATY5 DNA repair protein UVH36.7e-0932.96Show/hide
Query:  LKRNKGSEFSLMIKEAKALGLALGIP-CLDGMDASLQIQML--SFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMD
        L+RN  S  S M  E + L    GIP  +  M+A  Q   +  S LV G          +V + +   L   R   +V   +F      D  YV  Y M 
Subjt:  LKRNKGSEFSLMIKEAKALGLALGIP-CLDGMDASLQIQML--SFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMD

Query:  DIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIAS---------EGLSFAKKGKNSKKQG
        DIE++LG  R+ +I +A+LLGSDY++G+ G+G  +A ++V A  + D LQK             G + AK G   KK+G
Subjt:  DIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIAS---------EGLSFAKKGKNSKKQG

Q9LPD2 Flap endonuclease GEN-like 13.7e-0726.67Show/hide
Query:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL
        MGV  NFWD+L    +      L+NKR+ +DLS WIVQ +   +          LK +    F   I      G A  +  +DG  + L+ Q  +S    
Subjt:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL

Query:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI
           I    L      V +ER +    W R    +L  L   V            +L   G+V                               CY M  I
Subjt:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI

Query:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG
        E  LG  R  +I ++LL+G+DY S GV G+G + A +IV+   +  VL+++   G
Subjt:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG

Q9M2Z3 Single-strand DNA endonuclease 11.1e-5438.55Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNV--------------------------------------------------------AQN
        MGVK  WD+LE CKKT PL  LQNKR+C+DLSCW+V+L  V                                                        A +
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNV--------------------------------------------------------AQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVL----TRLFFVVKLG
           P +  SLKRN GSEFS +IKEAK +   LGI CLDG+ +A  Q  +L+   L                     + F F +++       ++  + LG
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVL----TRLFFVVKLG

Query:  DSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPK-------------SGH
        + GYVVCYEMDDI+++LG GRNS+I LALLLGSDYSQGV G+ +E AC++V+++GD+ +L+K+ASEGLSFA+K + SKKQ  P              +G+
Subjt:  DSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPK-------------SGH

Query:  GQYMHACDQFSEVIDAYLKPKCHSADSEAVTR
         +     ++  +VIDA++ PKCH ADS  V+R
Subjt:  GQYMHACDQFSEVIDAYLKPKCHSADSEAVTR

Arabidopsis top hitse value%identityAlignment
AT1G01880.1 5'-3' exonuclease family protein2.6e-0826.67Show/hide
Query:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL
        MGV  NFWD+L    +      L+NKR+ +DLS WIVQ +   +          LK +    F   I      G A  +  +DG  + L+ Q  +S    
Subjt:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL

Query:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI
           I    L      V +ER +    W R    +L  L   V            +L   G+V                               CY M  I
Subjt:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI

Query:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG
        E  LG  R  +I ++LL+G+DY S GV G+G + A +IV+   +  VL+++   G
Subjt:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG

AT1G01880.2 5'-3' exonuclease family protein7.6e-0826.67Show/hide
Query:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL
        MGV  NFWD+L    +      L+NKR+ +DLS WIVQ +   +          LK +    F   I      G A  +  +DG  + L+ Q  +S    
Subjt:  MGV-KNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQ-MLSFLVL

Query:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI
           I    L      V +ER +    W R +  +L  L   V            +L   G+V                               CY M  I
Subjt:  GQYIGISALV----SVVLERAQFLLSWFRFQNNVLTRLFFVV------------KLGDSGYV------------------------------VCYEMDDI

Query:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG
        E  LG  R  +I ++LL+G+DY S GV G+G + A +IV+   +  VL+++   G
Subjt:  ERQLGFGRNSMITLALLLGSDY-SQGVYGMGRESACQIVKAVGDSDVLQKIASEG

AT3G28030.1 5'-3' exonuclease family protein4.7e-1032.96Show/hide
Query:  LKRNKGSEFSLMIKEAKALGLALGIP-CLDGMDASLQIQML--SFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMD
        L+RN  S  S M  E + L    GIP  +  M+A  Q   +  S LV G          +V + +   L   R   +V   +F      D  YV  Y M 
Subjt:  LKRNKGSEFSLMIKEAKALGLALGIP-CLDGMDASLQIQML--SFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMD

Query:  DIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIAS---------EGLSFAKKGKNSKKQG
        DIE++LG  R+ +I +A+LLGSDY++G+ G+G  +A ++V A  + D LQK             G + AK G   KK+G
Subjt:  DIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIAS---------EGLSFAKKGKNSKKQG

AT3G28030.1 5'-3' exonuclease family protein5.6e-0343.24Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQ
        MGV+  W++L    + + +  L NKRL ID S W+VQ
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQ

AT3G48900.1 single-stranded DNA endonuclease family protein2.9e-4441.27Show/hide
Query:  SCWIV-------QLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFR
        S WIV           +A +   P +  SLKRN GSEFS +IKEAK +   LGI CLDG+ +A  Q  +L+   L                     + F 
Subjt:  SCWIV-------QLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFR

Query:  FQNNVL----TRLFFVVKLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQ
        F +++       ++  + LG+ GYVVCYEMDDI+++LG GRNS+I LALLLGSDYSQGV G+ +E AC++V+++GD+ +L+K+ASEGLSFA+K + SKKQ
Subjt:  FQNNVL----TRLFFVVKLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQ

Query:  GLPK-------------SGHGQYMHACDQFSEVIDAYLKPKCHSADSEAVTR
          P              +G+ +     ++  +VIDA++ PKCH ADS  V+R
Subjt:  GLPK-------------SGHGQYMHACDQFSEVIDAYLKPKCHSADSEAVTR

AT3G48900.2 single-stranded DNA endonuclease family protein7.5e-5638.55Show/hide
Query:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNV--------------------------------------------------------AQN
        MGVK  WD+LE CKKT PL  LQNKR+C+DLSCW+V+L  V                                                        A +
Subjt:  MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNV--------------------------------------------------------AQN

Query:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVL----TRLFFVVKLG
           P +  SLKRN GSEFS +IKEAK +   LGI CLDG+ +A  Q  +L+   L                     + F F +++       ++  + LG
Subjt:  DANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGM-DASLQIQMLSFLVLGQYIGISALVSVVLERAQFLLSWFRFQNNVL----TRLFFVVKLG

Query:  DSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPK-------------SGH
        + GYVVCYEMDDI+++LG GRNS+I LALLLGSDYSQGV G+ +E AC++V+++GD+ +L+K+ASEGLSFA+K + SKKQ  P              +G+
Subjt:  DSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQGLPK-------------SGH

Query:  GQYMHACDQFSEVIDAYLKPKCHSADSEAVTR
         +     ++  +VIDA++ PKCH ADS  V+R
Subjt:  GQYMHACDQFSEVIDAYLKPKCHSADSEAVTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACCGTCTTCAGAATAAGAGATTATGCATCGATCTCTCATGTTGGATAGTTCA
GCTTCAAAATGTTGCTCAAAATGATGCAAATCCCCAGCAATTATGCTCACTGAAAAGAAACAAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGAC
TGGCTCTTGGTATCCCCTGTCTAGATGGGATGGATGCTTCACTTCAGATTCAGATGCTTTCCTTTTTGGTGCTAGGACAGTATATAGGGATATCTGCCTTGGTGAGTGTC
GTACTAGAGCGTGCTCAGTTTCTATTGAGCTGGTTTAGATTTCAAAATAATGTACTCACTAGGCTGTTTTTTGTTGTTAAATTAGGAGATAGCGGTTATGTAGTTTGTTA
TGAAATGGATGACATCGAAAGACAATTAGGATTCGGGAGGAACTCAATGATTACGTTGGCTCTACTTCTTGGCAGTGATTACTCGCAAGGCGTTTATGGCATGGGTCGTG
AATCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGATGTCCTTCAAAAAATTGCATCCGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGA
CTTCCTAAGTCTGGGCATGGACAGTATATGCATGCATGTGATCAGTTTTCAGAAGTCATTGATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCTGTGAC
TAGGTGA
mRNA sequenceShow/hide mRNA sequence
CGAGACTCGAACAGGGCAAGCCAAGCCGAAAAACCTCTGCACTGGAGAAATGGGAGTAAAGAACTTCTGGGATATCTTAGAATCGTGCAAGAAAACTCTCCCACTTCACC
GTCTTCAGAATAAGAGATTATGCATCGATCTCTCATGTTGGATAGTTCAGCTTCAAAATGTTGCTCAAAATGATGCAAATCCCCAGCAATTATGCTCACTGAAAAGAAAC
AAGGGTTCTGAGTTCTCTTTAATGATAAAAGAGGCAAAAGCCTTAGGACTGGCTCTTGGTATCCCCTGTCTAGATGGGATGGATGCTTCACTTCAGATTCAGATGCTTTC
CTTTTTGGTGCTAGGACAGTATATAGGGATATCTGCCTTGGTGAGTGTCGTACTAGAGCGTGCTCAGTTTCTATTGAGCTGGTTTAGATTTCAAAATAATGTACTCACTA
GGCTGTTTTTTGTTGTTAAATTAGGAGATAGCGGTTATGTAGTTTGTTATGAAATGGATGACATCGAAAGACAATTAGGATTCGGGAGGAACTCAATGATTACGTTGGCT
CTACTTCTTGGCAGTGATTACTCGCAAGGCGTTTATGGCATGGGTCGTGAATCTGCTTGTCAGATTGTTAAAGCAGTAGGAGACAGTGATGTCCTTCAAAAAATTGCATC
CGAGGGACTGTCTTTCGCTAAGAAGGGGAAGAATTCCAAGAAGCAAGGACTTCCTAAGTCTGGGCATGGACAGTATATGCATGCATGTGATCAGTTTTCAGAAGTCATTG
ATGCCTATTTGAAACCCAAATGCCACTCAGCTGATTCTGAAGCTGTGACTAGGTGA
Protein sequenceShow/hide protein sequence
MGVKNFWDILESCKKTLPLHRLQNKRLCIDLSCWIVQLQNVAQNDANPQQLCSLKRNKGSEFSLMIKEAKALGLALGIPCLDGMDASLQIQMLSFLVLGQYIGISALVSV
VLERAQFLLSWFRFQNNVLTRLFFVVKLGDSGYVVCYEMDDIERQLGFGRNSMITLALLLGSDYSQGVYGMGRESACQIVKAVGDSDVLQKIASEGLSFAKKGKNSKKQG
LPKSGHGQYMHACDQFSEVIDAYLKPKCHSADSEAVTR