| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0033618.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa] | 2.5e-64 | 94.2 | Show/hide | Query: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
C + S QYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Subjt: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Query: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | KAG6574158.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] | 3.6e-63 | 87.84 | Show/hide | Query: MLSRIRTKLDCSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETD
M + T + S +YEDEPPEPE+EEGAEEELDNNN DDVPGEPVEAE+KEDEEP+ERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETD
Subjt: MLSRIRTKLDCSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETD
Query: PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: PLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | TYK22284.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucumis melo var. makuwa] | 4.3e-64 | 94.2 | Show/hide | Query: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
C + S QYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Subjt: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Query: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | XP_022141284.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia] | 3.6e-63 | 98.47 | Show/hide | Query: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
YEDEPPEPE+EEGAEEELDNNNNDDV GEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Subjt: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Query: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | XP_022923151.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] | 4.3e-64 | 98.47 | Show/hide | Query: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Y+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Subjt: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Query: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SSQ6 DNA-directed RNA polymerases II, IV and V subunit 6A | 1.2e-64 | 94.2 | Show/hide | Query: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
C + S QYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Subjt: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Query: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | A0A5D3DFB9 DNA-directed RNA polymerases II, IV and V subunit 6A | 2.1e-64 | 94.2 | Show/hide | Query: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
C + S QYEDEPPEPEIEEGAEEELDN NNDD+ GEPVEAEEKEDEEPVER RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Subjt: CSSDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR
Query: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: ERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | A0A6J1CI61 DNA-directed RNA polymerases II, IV and V subunit 6A | 1.8e-63 | 98.47 | Show/hide | Query: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
YEDEPPEPE+EEGAEEELDNNNNDDV GEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Subjt: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Query: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | A0A6J1E614 DNA-directed RNA polymerases II, IV and V subunit 6A-like | 2.1e-64 | 98.47 | Show/hide | Query: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Y+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Subjt: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Query: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| | A0A6J1J2R7 DNA-directed RNA polymerases II, IV and V subunit 6A-like | 2.1e-64 | 98.47 | Show/hide | Query: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Y+DEPPEPE+EEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Subjt: YEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFT
Query: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
Subjt: IRRYLPDGSYEDWGVDELIVEDSWKRQVGGA
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O88828 DNA-directed RNA polymerases I, II, and III subunit RPABC2 | 1.2e-27 | 59.38 | Show/hide | Query: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
SD+ D ++EE +E LD+ N + G E VE + + R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Subjt: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Query: RKIPFTIRRYLPDGSYEDWGVDELIVED
RKIP IRRYLPDGSYEDWGVDELI+ D
Subjt: RKIPFTIRRYLPDGSYEDWGVDELIVED
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| | P61217 DNA-directed RNA polymerases I, II, and III subunit RPABC2 | 1.5e-27 | 59.38 | Show/hide | Query: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
SD+ D ++EE +E LD+ N + G E VE + + R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Subjt: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Query: RKIPFTIRRYLPDGSYEDWGVDELIVED
RKIP IRRYLPDGSYEDWGVDELI+ D
Subjt: RKIPFTIRRYLPDGSYEDWGVDELIVED
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| | P61219 DNA-directed RNA polymerases I, II, and III subunit RPABC2 | 1.2e-27 | 59.38 | Show/hide | Query: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
SD+ D ++EE +E LD+ N + G E VE + + R T+ +MTKYERAR+LGTRALQI+M APVMVELEGETDPL IAMKEL+
Subjt: SDSAQYEDEPPEPEIEEGAEEELDNNNNDDVPG-EPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRE
Query: RKIPFTIRRYLPDGSYEDWGVDELIVED
RKIP IRRYLPDGSYEDWGVDELI+ D
Subjt: RKIPFTIRRYLPDGSYEDWGVDELIVED
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| | Q9FJ98 DNA-directed RNA polymerases II, IV and V subunit 6A | 1.5e-56 | 83.58 | Show/hide | Query: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
D YEDEP EPEIEEG EE+++ NDDV GEP+EAE+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RK
Subjt: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
Query: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
IPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
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| | Q9SJ96 DNA-directed RNA polymerases II and V subunit 6B | 5.5e-54 | 82.09 | Show/hide | Query: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
D YEDEP EPEIEEG EE+ D NDDV +P+E E+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RK
Subjt: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
Query: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
IPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT2G04630.1 RNA polymerase Rpb6 | 3.9e-55 | 82.09 | Show/hide | Query: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
D YEDEP EPEIEEG EE+ D NDDV +P+E E+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RK
Subjt: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
Query: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
IPFTIRRYLPD SYE+WGVDELIVEDSWKRQVGG
Subjt: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
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| | AT5G51940.1 RNA polymerase Rpb6 | 1.1e-57 | 83.58 | Show/hide | Query: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
D YEDEP EPEIEEG EE+++ NDDV GEP+EAE+K + EPV+R RKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELR+RK
Subjt: DSAQYEDEPPEPEIEEGAEEELDNNNNDDVPGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERK
Query: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
IPFTIRRYLPDGS+E+WGVDELIVEDSWKRQVGG
Subjt: IPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGG
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