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Lsi05G012710 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012710
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionLysM domain-containing protein
Genome locationchr05:20457169..20457534
RNA-Seq ExpressionLsi05G012710
SyntenyLsi05G012710
Gene Ontology termsGO:0006468 - protein phosphorylation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0004672 - protein kinase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR018392 - LysM domain
IPR036779 - LysM domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6576752.1 hypothetical protein SDJN03_24326, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4779.51Show/hide
Query:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGD---RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD
        MP +   R+ P SSR LIDVVSWYCA+ LLGLILIGSIRETSSSS+S D   ++LRGNL+TGR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPD
Subjt:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGD---RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPD

Query:  DVFPGLVIKIIASHKPSNLGFQ
        DVFPGLVIKII+SH P  LGFQ
Subjt:  DVFPGLVIKIIASHKPSNLGFQ

KGN57357.2 hypothetical protein Csa_009741 [Cucumis sativus]3.6e-4787.29Show/hide
Query:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MPGVS+ RS RPQ SSRPLIDVVSWYCAVGLLGLILIGSIRETSSS     RLLRGNLVT RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIASHKPSNL
        VFPGLVIKIIAS    NL
Subjt:  VFPGLVIKIIASHKPSNL

XP_004150301.1 uncharacterized protein LOC101210054 [Cucumis sativus]3.6e-4787.29Show/hide
Query:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MPGVS+ RS RPQ SSRPLIDVVSWYCAVGLLGLILIGSIRETSSS     RLLRGNLVT RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIASHKPSNL
        VFPGLVIKIIAS    NL
Subjt:  VFPGLVIKIIASHKPSNL

XP_008439155.1 PREDICTED: uncharacterized protein LOC103484036 [Cucumis melo]1.1e-4887.5Show/hide
Query:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MPGVSI RS RPQ   SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSS    R LRGNLVT RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIASHKPSNL
        DDVFPGLVIKIIAS   +NL
Subjt:  DDVFPGLVIKIIASHKPSNL

XP_022985106.1 uncharacterized protein LOC111483184 [Cucurbita maxima]2.1e-4779.34Show/hide
Query:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS--GDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP +   R+ P SSR LIDVVSWYCAV +LGLILIGSIRETSSS+S+  G ++LRGNL+TGR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS--GDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIASHKPSNLGFQ
        VFPGLVIKII+SH P  LGFQ
Subjt:  VFPGLVIKIIASHKPSNLGFQ

TrEMBL top hitse value%identityAlignment
A0A0A0L5R9 LysM domain-containing protein1.8e-4787.29Show/hide
Query:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MPGVS+ RS RPQ SSRPLIDVVSWYCAVGLLGLILIGSIRETSSS     RLLRGNLVT RPCDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPGVSIRRS-RPQ-SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIASHKPSNL
        VFPGLVIKIIAS    NL
Subjt:  VFPGLVIKIIASHKPSNL

A0A1S3AXP2 uncharacterized protein LOC1034840365.5e-4987.5Show/hide
Query:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MPGVSI RS RPQ   SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSS    R LRGNLVT RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIASHKPSNL
        DDVFPGLVIKIIAS   +NL
Subjt:  DDVFPGLVIKIIASHKPSNL

A0A5A7VAP9 Peptidoglycan-binding LysM domain-containing protein5.5e-4987.5Show/hide
Query:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
        MPGVSI RS RPQ   SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSS    R LRGNLVT RPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP
Subjt:  MPGVSIRRS-RPQ---SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDP

Query:  DDVFPGLVIKIIASHKPSNL
        DDVFPGLVIKIIAS   +NL
Subjt:  DDVFPGLVIKIIASHKPSNL

A0A6J1DRZ3 uncharacterized protein LOC1110238413.1e-4478.45Show/hide
Query:  RSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGD--RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
        RS   SSRP  DVVSWYCAVG+L LILIGSIRE++ S+ + D  RL RGNLV GRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
Subjt:  RSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGD--RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI

Query:  KIIASHKPSNLGFQAA
        KII+S  PSN G + A
Subjt:  KIIASHKPSNLGFQAA

A0A6J1J769 uncharacterized protein LOC1114831841.0e-4779.34Show/hide
Query:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS--GDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
        MP +   R+ P SSR LIDVVSWYCAV +LGLILIGSIRETSSS+S+  G ++LRGNL+TGR CDEIYVVGEGETLHTISDKCGDP+IVERNPHIHDPDD
Subjt:  MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS--GDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD

Query:  VFPGLVIKIIASHKPSNLGFQ
        VFPGLVIKII+SH P  LGFQ
Subjt:  VFPGLVIKIIASHKPSNLGFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G52790.1 peptidoglycan-binding LysM domain-containing protein1.6e-2150Show/hide
Query:  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS-GDRLLRGNLVTG----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK
        SS  + + +SWYCAV    ++L+ S +     S+   ++     ++TG    RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+
Subjt:  SSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSS-GDRLLRGNLVTG----RP-CDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIK

Query:  IIAS
        I  S
Subjt:  IIAS

AT4G25433.1 peptidoglycan-binding LysM domain-containing protein2.9e-2658.33Show/hide
Query:  DVVSWYCAVGLLGLILIGSIRETSSSSSSGD-------RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
        + V+ YC V LL L L GS++  S+   SG+        + RG  +  RPC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+IK+
Subjt:  DVVSWYCAVGLLGLILIGSIRETSSSSSSGD-------RLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI

AT5G62150.1 peptidoglycan-binding LysM domain-containing protein4.3e-3062.75Show/hide
Query:  IRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI
        +R SR  SS    D+ +W  AV LL LIL+ S+RE ++S+S     +RG+  + +PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+
Subjt:  IRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI

Query:  KI
        KI
Subjt:  KI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCGGCGTCTCAATTCGCAGAAGTAGGCCACAGTCTTCACGACCGCTAATCGACGTCGTTTCGTGGTACTGCGCGGTGGGCCTGTTGGGCCTGATCTTGATTGGGTC
GATCAGAGAAACTTCGTCGTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGAATTTGGTGACGGGGCGGCCGTGCGATGAGATTTATGTTGTCGGAGAAGGAGAAACGC
TTCACACAATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCC
CATAAACCTTCCAACTTGGGATTTCAAGCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCCGGCGTCTCAATTCGCAGAAGTAGGCCACAGTCTTCACGACCGCTAATCGACGTCGTTTCGTGGTACTGCGCGGTGGGCCTGTTGGGCCTGATCTTGATTGGGTC
GATCAGAGAAACTTCGTCGTCTTCCTCCTCCGGTGACCGGTTGCTGAGAGGGAATTTGGTGACGGGGCGGCCGTGCGATGAGATTTATGTTGTCGGAGAAGGAGAAACGC
TTCACACAATTAGCGACAAGTGCGGTGACCCGTTTATCGTGGAGCGGAACCCGCATATCCATGACCCGGATGACGTCTTCCCCGGTTTGGTTATTAAAATTATCGCCTCC
CATAAACCTTCCAACTTGGGATTTCAAGCTGCTTAA
Protein sequenceShow/hide protein sequence
MPGVSIRRSRPQSSRPLIDVVSWYCAVGLLGLILIGSIRETSSSSSSGDRLLRGNLVTGRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIIAS
HKPSNLGFQAA