CuGenDBv2

Gene ID	Lsi05G012790
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	RAB6-interacting golgin
Genome location	chr05:20538481..20541344
RNA-Seq Expression	Lsi05G012790
Synteny	Lsi05G012790
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033596.1 hypothetical protein E6C27_scaffold239G00290 [Cucumis melo var. makuwa]

1.2e-123

95.7

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDPSLLPE GPDGLAREAPVIAYTE+IIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        WEAASKVVQDEEA KQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVK MGGAQNSRV+DSS VAT+TE GAK NENVPNQT SD A
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
        PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
Subjt:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

KAG6574142.1 hypothetical protein SDJN03_28029, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-105

86.1

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDP LLPE GPDGLAREAPVIAYTE+IIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA
        WEAASKVVQDEEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + +TMG AQNSRVADSSGVATSTE  GAKANE+   Q  
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA

Query:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

XP_011651127.1 uncharacterized protein LOC101210795 [Cucumis sativus]

2.7e-123

95.7

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDPSLLP  GPDGLAREAPVIAYTE+IIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        WEAASKVVQ+EEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDV TMGGAQNSRV+DSSGVAT+TE GAK NENVPNQT SD A
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
        PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
Subjt:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

XP_022945967.1 uncharacterized protein LOC111450054 [Cucurbita moschata]

1.5e-105

86.1

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDP LLPE GPDGLAREAPVIAYTE+IIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA
        WEAASKVVQDEEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + +TMG AQNSRVADSSGVATSTE  GAKANE+   Q  
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA

Query:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

XP_038898541.1 uncharacterized protein LOC120086143 [Benincasa hispida]

1.6e-123

95.7

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDPSLLPE GPDGLAREAPVIAYTE+IIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIE+STERVRAAKLKEEQAKKV
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNS+RVSTS+SHDVKTMGGAQNSR ADSSGVATSTE GAKA+ENVPN  A DGA
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
        PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
Subjt:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8J1 RAB6-interacting golgin

2.2e-110

89.45

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDPSLLP                   IIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        WEAASKVVQ+EEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDV TMGGAQNSRV+DSSGVAT+TE GAK NENVPNQT SD A
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
        PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
Subjt:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

A0A5D3DFA0 RAB6-interacting golgin

5.9e-124

95.7

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDPSLLPE GPDGLAREAPVIAYTE+IIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        WEAASKVVQDEEA KQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVK MGGAQNSRV+DSS VAT+TE GAK NENVPNQT SD A
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
        PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA
Subjt:  PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

A0A6J1CI49 uncharacterized protein LOC111011714

4.0e-104

84.56

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        M S+PSLLPE GPDGLA E+PVIAYTE+IIEE  LQLRK I+EN SKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEM+TER+RAAKLKEEQAK+ 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAG--AKANENVPNQ-TAS
        WEAASKVVQDEE  KQKLCEDLNHLVQESSN QLTRLEELKRRMEALN  RVSTSVS+D KT+GGAQNSRV+DSSG  TSTE G  A+ANE+ PNQ T S
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAG--AKANENVPNQ-TAS

Query:  DGA-PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
         GA PV+NGQNQKPPSE EGRGKKKNQ HGRGKGIGAVPKGRSS DSGWTGSGFDVDGR
Subjt:  DGA-PVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

A0A6J1G2D4 uncharacterized protein LOC111450054

7.3e-106

86.1

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDP LLPE GPDGLAREAPVIAYTE+IIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA
        WEAASKVVQDEEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + +TMG AQNSRVADSSGVATSTE  GAKANE+   Q  
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA

Query:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

A0A6J1HV58 uncharacterized protein LOC111467736

6.1e-105

85.71

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        MGSDP LLPE GPDGLAREAPVIAYTE+IIEEG LQLRK IDEN SKIRDVERELA LTMEMKLTSGPKKAALELLRKKIEMSTER+ AAKLKEEQAKK 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA
        WEAASKVVQDEEA KQKLC+DLNHLVQES+N QLTRLEELKRRMEALNS+RVSTSVS    + +TM  AQNSRVADSSGVATSTE  GAKANE+   Q  
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVS---HDVKTMGGAQNSRVADSSGVATSTE-AGAKANENVPNQTA

Query:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
        S  APV+NGQNQKP SETE RGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
Subjt:  SDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G51840.1 unknown protein

6.8e-64

58.91

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Query:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV
        M SDP L  E G DGLAREAPVIAYTE+IIEE  +QLRK I+EN +KIRDVERE  NL+ME+KLT+GPKKAA+E LRKKIE+STER+ AAKLKEE+A+K 
Subjt:  MGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLTMEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKV

Query:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA
        +EAASKVV+DEEA KQ LCEDLN LVQ+SSN Q  RLEELKRR+EALN +R STS+          Q  +  ++  V  S  A A AN+  P +  ++  
Subjt:  WEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNSRVADSSGVATSTEAGAKANENVPNQTASDGA

Query:  PVINGQ--NQKP-PSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR
            G+   Q+P  +E E + KKK Q  GRG+GIG + KGR     GWTG+GFDVDGR
Subjt:  PVINGQ--NQKP-PSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGR

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

CACATGCGTATCAATCGGTCAACTCGCGGGCCGGTTGCATTTGCTGAACCTCGACGTTTCGTTTTGCCTGCGAAACTGAGCTTACCTTCCCCCATCGAAGAACCCCCAGT
TTTGGAGATCTCGCTATCGCTATCGCCATTTTCTCGCAAAACAATGGGTTCTGATCCTTCTCTTTTGCCTGAGTTTGGTCCCGATGGCCTTGCCAGGGAAGCTCCTGTAA
TTGCCTACACTGAAAGGATAATCGAGGAAGGGAGTCTTCAATTGAGAAAATGTATTGATGAAAATTTATCTAAAATTCGGGATGTTGAACGGGAATTGGCAAATCTTACA
ATGGAGATGAAACTCACATCTGGGCCGAAAAAAGCAGCACTTGAACTTTTGCGGAAGAAAATAGAAATGTCAACAGAGAGAGTACGTGCAGCTAAGTTGAAGGAAGAACA
AGCAAAGAAGGTTTGGGAAGCAGCATCAAAGGTAGTGCAGGACGAGGAAGCTGCAAAGCAAAAACTGTGTGAAGATTTGAATCATCTGGTTCAAGAAAGCAGTAACTTCC
AGTTGACTAGACTAGAAGAACTAAAGCGGCGCATGGAAGCTTTGAATTCAAGTCGAGTATCGACCTCTGTTTCTCATGATGTCAAGACAATGGGAGGTGCTCAGAATAGC
AGAGTTGCAGATTCTTCAGGAGTTGCTACATCAACAGAAGCAGGTGCAAAAGCAAATGAAAATGTCCCCAATCAAACAGCCAGTGATGGAGCTCCAGTGATAAATGGGCA
AAATCAAAAGCCCCCTTCTGAGACAGAAGGAAGAGGGAAAAAGAAAAACCAGTTTCATGGAAGAGGGAAGGGAATTGGAGCAGTGCCTAAAGGAAGAAGCTCTGCAGACT
CTGGCTGGACTGGCTCTGGCTTTGATGTGGATGGTAGGGCGTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

HMRINRSTRGPVAFAEPRRFVLPAKLSLPSPIEEPPVLEISLSLSPFSRKTMGSDPSLLPEFGPDGLAREAPVIAYTERIIEEGSLQLRKCIDENLSKIRDVERELANLT
MEMKLTSGPKKAALELLRKKIEMSTERVRAAKLKEEQAKKVWEAASKVVQDEEAAKQKLCEDLNHLVQESSNFQLTRLEELKRRMEALNSSRVSTSVSHDVKTMGGAQNS
RVADSSGVATSTEAGAKANENVPNQTASDGAPVINGQNQKPPSETEGRGKKKNQFHGRGKGIGAVPKGRSSADSGWTGSGFDVDGRA

Lsi05G012790 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome