; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G012850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionBHLH domain-containing protein
Genome locationchr05:20644384..20646133
RNA-Seq ExpressionLsi05G012850
SyntenyLsi05G012850
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0090575 - RNA polymerase II transcription factor complex (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0000981 - DNA-binding transcription factor activity, RNA polymerase II-specific (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6574137.1 Transcription factor basic helix-loop-helix 126, partial [Cucurbita argyrosperma subsp. sororia]3.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

KAG7013193.1 Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]3.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

XP_022945714.1 transcription factor bHLH118 [Cucurbita moschata]3.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

XP_022967981.1 transcription factor bHLH118-like [Cucurbita maxima]3.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

XP_038876352.1 transcription factor bHLH36-like [Benincasa hispida]1.1e-4585.71Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNN---NNNNEVKNSGIRRRRKELETNLDHHFDGSGG--VSDQDHQIKLMHRERERQRRQ
        MY LQKSEEKCFQISFNPHQHIIPEDLIFGHHVS VE +H+NN   NNNN VKN   RRRRK LE NLDHHFDGSGG  VSDQDH+IKLMHRERERQRRQ
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNN---NNNNEVKNSGIRRRRKELETNLDHHFDGSGG--VSDQDHQIKLMHRERERQRRQ

Query:  QMGALYMSLRTLLPLEFIK
        QMGALYMSLRTLLPLEFIK
Subjt:  QMGALYMSLRTLLPLEFIK

TrEMBL top hitse value%identityAlignment
A0A0A0LB70 BHLH domain-containing protein4.2e-3268.33Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTV------EPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR
        MYPL+KSEEKCFQISFNPHQHIIPEDLIF HHVS        + H+++NN NN VKN    RRRK L   L+          DQDH+IKLMHRERERQRR
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTV------EPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR

Query:  QQMGALYMSLRTLLPLEFIK
        Q+MGALYMSLRTLLPLEFIK
Subjt:  QQMGALYMSLRTLLPLEFIK

A0A5A7SRP9 Transcription factor bHLH118-like2.7e-3167.5Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTV------EPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR
        MYPL+KSEEKCFQISFNPHQHIIPEDLIFGHH S           +++NN NN VKN  + RRRK L   L+          DQDH+IKLMHRERERQRR
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTV------EPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR

Query:  QQMGALYMSLRTLLPLEFIK
        Q+MGALYMSLRTLLPLEFIK
Subjt:  QQMGALYMSLRTLLPLEFIK

A0A6J1CJV9 transcription factor bHLH118-like1.2e-3473.33Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNS---GIRRRRK---ELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR
        MYPLQK+EEKCFQISFNPHQHIIPEDLIFG HVS  E   HNNNNN  V N+    IRRRRK   +L T+LD +   SGGVSD DH  K+MHRERERQRR
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNS---GIRRRRK---ELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRR

Query:  QQMGALYMSLRTLLPLEFIK
        Q+MG+LYMSLRTLLPLEFIK
Subjt:  QQMGALYMSLRTLLPLEFIK

A0A6J1G1R2 transcription factor bHLH1181.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

A0A6J1HTL2 transcription factor bHLH118-like1.8e-3578.07Show/hide
Query:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL
        M+PLQK E+KCFQISFNPHQHIIPEDLIFG  VS VE H  +NNNNN V N G R RRK L+ NLDH      GVSDQDHQIKLMHRERERQRRQ+MGAL
Subjt:  MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGAL

Query:  YMSLRTLLPLEFIK
        YMSLRTLLPLEFIK
Subjt:  YMSLRTLLPLEFIK

SwissProt top hitse value%identityAlignment
Q9FLI1 Transcription factor bHLH366.5e-0668.42Show/hide
Query:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS
        K+MHRE ERQRRQ+M +LY SLR+LLPL FIK    TS
Subjt:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS

Q9STJ6 Transcription factor bHLH1266.1e-0450Show/hide
Query:  GSGG------VSDQDHQIKLMHRERERQRRQQMGALYMSLRTLLPLEFIK
        GSGG        D   + KL+HR+ ERQRRQ+M  L+ +LRT LPL++IK
Subjt:  GSGG------VSDQDHQIKLMHRERERQRRQQMGALYMSLRTLLPLEFIK

Q9STJ7 Transcription factor bHLH1182.1e-0460.53Show/hide
Query:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS
        KL+H+E E++RRQ+M +LY SLR+LLPLEFI+    TS
Subjt:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS

Arabidopsis top hitse value%identityAlignment
AT4G25400.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein1.5e-0560.53Show/hide
Query:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS
        KL+H+E E++RRQ+M +LY SLR+LLPLEFI+    TS
Subjt:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS

AT4G25410.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.3e-0550Show/hide
Query:  GSGG------VSDQDHQIKLMHRERERQRRQQMGALYMSLRTLLPLEFIK
        GSGG        D   + KL+HR+ ERQRRQ+M  L+ +LRT LPL++IK
Subjt:  GSGG------VSDQDHQIKLMHRERERQRRQQMGALYMSLRTLLPLEFIK

AT5G51780.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.6e-0768.42Show/hide
Query:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS
        K+MHRE ERQRRQ+M +LY SLR+LLPL FIK    TS
Subjt:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIKVSDPTS

AT5G51790.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.8e-0462.5Show/hide
Query:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIK
        KL+HR  ERQRRQ+M  L+ SLR+ LPL++IK
Subjt:  KLMHRERERQRRQQMGALYMSLRTLLPLEFIK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACCCTTTACAGAAAAGCGAAGAGAAGTGCTTCCAGATTTCGTTTAATCCTCACCAACACATAATCCCAGAAGATCTGATTTTTGGGCATCATGTTTCAACTGTGGA
ACCCCATCATCACAATAATAATAATAACAATGAGGTCAAGAATTCGGGCATTCGTAGGAGAAGGAAGGAGCTTGAAACTAATTTGGATCATCATTTTGATGGAAGTGGTG
GCGTTTCTGATCAAGATCATCAAATCAAGTTGATGCATAGAGAAAGGGAAAGGCAAAGAAGACAACAAATGGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTT
GAATTTATCAAGGTAAGTGATCCGACCTCACTTGATTTGCCTCAGCTTGGAAATAAGCTTACAGAAGCAATGCCACTGCTGAGACAAGTAACAGATTAA
mRNA sequenceShow/hide mRNA sequence
AGGATTTAGATGGAATCTTCTTGCTATCTAAACTCTAAACCCATTTGCAAGATATTACCCTAACAAACGCATCTTCTTAAATTTGTTTCCAAATTCTTAGAGCGACACAT
TATTTTTTATTTTAATTTTTCCATCTATATAATGTACCCTTTACAGAAAAGCGAAGAGAAGTGCTTCCAGATTTCGTTTAATCCTCACCAACACATAATCCCAGAAGATC
TGATTTTTGGGCATCATGTTTCAACTGTGGAACCCCATCATCACAATAATAATAATAACAATGAGGTCAAGAATTCGGGCATTCGTAGGAGAAGGAAGGAGCTTGAAACT
AATTTGGATCATCATTTTGATGGAAGTGGTGGCGTTTCTGATCAAGATCATCAAATCAAGTTGATGCATAGAGAAAGGGAAAGGCAAAGAAGACAACAAATGGGTGCTCT
TTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCAAGGTAAGTGATCCGACCTCACTTGATTTGCCTCAGCTTGGAAATAAGCTTACAGAAGCAATGCCACTGC
TGAGACAAGTAACAGATTAACATATAATTATTACTTGTTGTTAATTTGTGCTTAATTAGGCTTTACTTTTTATTGGGACCTCTCTCAGTACGTAGTTTGTACCATAATCA
CATTCACTTGGCTTCACTCTGAACTCCTAATTAACTCTTTTTTTTCTTTTTTATTTTTGTTACAATAAATAACTTTCCAGCTTTCTACCATATATGTATATATAAGAATT
TGGCTTCTGTGTGAAATCTAGCTCTTCTTTGCCTTTTTGACACTCGTATTGCTGATGGGAAAATTTAGGTATCACTTATAGTTAAAGCTTATTTTGGAGAATGTAAAATT
TCCTAACTTTCTATTGCATGTACAAATACAATAAAACTACATTTTGTTATTTTCATGCATGTGCACTGAATAAT
Protein sequenceShow/hide protein sequence
MYPLQKSEEKCFQISFNPHQHIIPEDLIFGHHVSTVEPHHHNNNNNNEVKNSGIRRRRKELETNLDHHFDGSGGVSDQDHQIKLMHRERERQRRQQMGALYMSLRTLLPL
EFIKVSDPTSLDLPQLGNKLTEAMPLLRQVTD