; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G012950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionembryo-specific protein ATS3B-like
Genome locationchr05:20728538..20729897
RNA-Seq ExpressionLsi05G012950
SyntenyLsi05G012950
Gene Ontology termsGO:0005730 - nucleolus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003724 - RNA helicase activity (molecular function)
GO:0005515 - protein binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR010417 - Embryo-specific ATS3
IPR036392 - PLAT/LH2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650438.1 hypothetical protein Csa_009650 [Cucumis sativus]3.3e-7189.66Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIP DVWFGFNLCGH SSSNR SSCIG+ YVI+VSI+LLLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

XP_004148122.1 embryo-specific protein ATS3B [Cucumis sativus]3.3e-7189.66Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIP DVWFGFNLCGH SSSNR SSCIG+ YVI+VSI+LLLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

XP_022923164.1 embryo-specific protein ATS3B-like [Cucurbita moschata]1.1e-6988.28Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQICYVYLYR+GPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGHASSSNR SSCI FLYV  VSILLL L
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

XP_022984446.1 embryo-specific protein ATS3B-like [Cucurbita maxima]8.2e-7088.28Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGHASSSNR SSCI FLYV  VSILLL L
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

XP_038877434.1 embryo-specific protein ATS3B-like [Benincasa hispida]1.4e-7292.41Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP++TRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGH SSSNR SSC+ FLYVILVSILLLLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

TrEMBL top hitse value%identityAlignment
A0A0A0L5P4 Uncharacterized protein1.6e-7189.66Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV+ISGD+SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIP DVWFGFNLCGH SSSNR SSCIG+ YVI+VSI+LLLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

A0A1S3AXZ5 uncharacterized protein LOC1034840161.5e-6988.97Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSC SP+YTRDQISLSFGDAYGNQ+YVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYR+GPDAWIPTTV ISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIP+DVWFGFNLCGH SSSN  S CIG  YVILVSILLLLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

A0A6J1CHB0 embryo-specific protein ATS3B-like isoform X37.5e-6987.59Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++Q GSCSYSVVISTSCSSPSYTRD ISLSFGDAYGNQ+YVPR+DDPSRR FERCS+DTF INGPCAYQICYVYLYRSGPDAWIPTTVKISGD+SRP+TF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGHASSSNR SSC+ F+YVI V IL LLL
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

A0A6J1E5K7 embryo-specific protein ATS3B-like5.2e-7088.28Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQICYVYLYR+GPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGHASSSNR SSCI FLYV  VSILLL L
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

A0A6J1J591 embryo-specific protein ATS3B-like4.0e-7088.28Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        ++QLGSCSYSVVISTSCSSP+YTRDQIS+SFGDAYGNQ+YVPR+DDPSRRIFERCSSDTF ++GPCAYQ+CYVYLYRSGPDAWIPTTVKISG +SRPVTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL
        NYNTAIPNDVWFGFNLCGHASSSNR SSCI FLYV  VSILLL L
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL

SwissProt top hitse value%identityAlignment
Q681K2 Embryo-specific protein ATS3A2.9e-4158.73Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+ I+GPC   +CY+YL R G D W P  VKI G   R VTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRS
         YN  +PN VW+GFN+C    ++  S
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRS

Q6NPM5 Embryo-specific protein ATS3B3.2e-4861.59Show/hide
Query:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV
        ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSDTF INGPC YQICYVYLYRSGPD WIP TVKI    S+ V
Subjt:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV

Query:  TFNYNTAIPNDVWFGFNLCGHASSSN------RSSSCIGFLYVILVSILLL
        TF YNT +P  VW+GFN C  AS SN      R S  I   +V+  + LLL
Subjt:  TFNYNTAIPNDVWFGFNLCGHASSSN------RSSSCIGFLYVILVSILLL

Q9LYP6 Embryo-specific protein ATS34.2e-2442.31Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS
        F+++ ++P  + W+G N C   +++ R SS
Subjt:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS

Arabidopsis top hitse value%identityAlignment
AT2G41475.1 Embryo-specific protein 3, (ATS3)2.0e-4258.73Show/hide
Query:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF
        L+   +CSY+V+I TSCSS SYTRD+IS+SFGD YGN+VYV RLDDPS R FE+CSSDT+ I+GPC   +CY+YL R G D W P  VKI G   R VTF
Subjt:  LKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTF

Query:  NYNTAIPNDVWFGFNLCGHASSSNRS
         YN  +PN VW+GFN+C    ++  S
Subjt:  NYNTAIPNDVWFGFNLCGHASSSNRS

AT5G07190.1 seed gene 33.0e-2542.31Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS
        F+++ ++P  + W+G N C   +++ R SS
Subjt:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS

AT5G07190.2 seed gene 33.0e-2542.31Show/hide
Query:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT
        Q G+C Y+VV+ TSC SP  TRDQIS+ FGDA GN+VY P+L    R      +CS++TF + G C    IC +Y+ R+GPD W+P +++I  + S+ V 
Subjt:  QLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRI--FERCSSDTFGINGPCAYQ-ICYVYLYRSGPDAWIPTTVKISGDHSRPVT

Query:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS
        F+++ ++P  + W+G N C   +++ R SS
Subjt:  FNYNTAIPN-DVWFGFNLCGHASSSNRSSS

AT5G62200.1 Embryo-specific protein 3, (ATS3)2.2e-4961.59Show/hide
Query:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV
        ++++LG +C+Y+V+ISTSCSS  YTRDQIS++FGD YGNQ+Y PRLDDPS + FE+CSSDTF INGPC YQICYVYLYRSGPD WIP TVKI    S+ V
Subjt:  MLKQLG-SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPV

Query:  TFNYNTAIPNDVWFGFNLCGHASSSN------RSSSCIGFLYVILVSILLL
        TF YNT +P  VW+GFN C  AS SN      R S  I   +V+  + LLL
Subjt:  TFNYNTAIPNDVWFGFNLCGHASSSN------RSSSCIGFLYVILVSILLL

AT5G62210.1 Embryo-specific protein 3, (ATS3)8.0e-3149.14Show/hide
Query:  SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDP--SRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYN
        SC Y+V+++TSC SP ++RDQ++++ GDA  NQV  PRLD P      FE+CSSDTF + G C   IC VY+YRSG D WIP TV+I  + S+ V F++N
Subjt:  SCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDP--SRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYN

Query:  TAIPNDVWFGFNLCGH
          +P ++W+G N C +
Subjt:  TAIPNDVWFGFNLCGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGG
AAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATG
TCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGAT
GTATGGTTCGGGTTTAACTTGTGTGGTCATGCCTCGTCTTCAAACCGTAGTTCAAGTTGCATAGGGTTCTTATATGTCATTTTAGTGTCTATTCTTCTACTTCTCTTGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAGCAACTCGGGAGTTGTTCTTATTCGGTTGTTATATCGACAAGCTGTTCGTCGCCTTCATACACAAGGGATCAGATCAGTCTTTCATTCGGTGATGCTTATGG
AAACCAGGTTTATGTACCAAGGCTTGATGACCCATCTAGAAGGATATTTGAAAGATGTTCTTCTGATACATTTGGCATAAATGGACCTTGTGCTTACCAAATATGTTATG
TCTATCTTTATCGCTCTGGACCGGATGCCTGGATCCCAACAACAGTGAAAATCTCTGGTGATCATTCTAGACCTGTCACGTTTAACTACAACACTGCCATACCGAACGAT
GTATGGTTCGGGTTTAACTTGTGTGGTCATGCCTCGTCTTCAAACCGTAGTTCAAGTTGCATAGGGTTCTTATATGTCATTTTAGTGTCTATTCTTCTACTTCTCTTGTA
ATTTTGTGCTATGTCAGGATGCTGTTCATGTTCTATCCTTGATAAGAATACATTTTGATATTAAAGGGCACGGATATCTAACTATAAAGCAGCATCGAGATTGTACTTTT
GTAGATTTAATACAACAGGCAGAGGGAGTTCTTGGTGATTGAGTCTCTTGACTTGGGATAAGCTTTTGAATATCTTATTATGGAATTGGGAAATAGAGAAATTTCTGGTT
TTGTATATTCTTTGATATGTTGGCCTTCTGATTCAGGTGGGACTCTTCCTTTGTTAGCTTTATCCTATAAAACTTTGTTATGTCA
Protein sequenceShow/hide protein sequence
MLKQLGSCSYSVVISTSCSSPSYTRDQISLSFGDAYGNQVYVPRLDDPSRRIFERCSSDTFGINGPCAYQICYVYLYRSGPDAWIPTTVKISGDHSRPVTFNYNTAIPND
VWFGFNLCGHASSSNRSSSCIGFLYVILVSILLLLL