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Lsi05G012960 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G012960
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEmbryo-specific family protein
Genome locationchr05:20732899..20734937
RNA-Seq ExpressionLsi05G012960
SyntenyLsi05G012960
Gene Ontology termsGO:0005737 - cytoplasm (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR010417 - Embryo-specific ATS3
IPR036392 - PLAT/LH2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033581.1 embryo-specific family protein [Cucumis melo var. makuwa]1.0e-5788.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

TYK30337.1 embryo-specific family protein [Cucumis melo var. makuwa]1.0e-5788.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

XP_004148153.1 embryo-specific protein ATS3A [Cucumis sativus]4.8e-5585.25Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPC DQICFFYLYKNGSDNWIPETVEISSPDIDTVKY YNSSIP DTWYGF+DCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        G LPRWKW+ASLIPVL S  +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

XP_008439124.1 PREDICTED: uncharacterized protein LOC103484014 isoform X1 [Cucumis melo]1.0e-5788.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

XP_038877430.1 embryo-specific protein ATS3B-like [Benincasa hispida]3.0e-5788.33Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPPVPSVAGC
        +IYEPKLEVE+ NAF+KCSKDIFELIGPCTDQICFFYLYK+GSDNWIPETVEISSPDIDT KY YNSSIP DTWYGFDDCQYFPSPSPPPPPPVPS A  
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPPVPSVAGC

Query:  LPRWKWLASLIPVLLSSAVL
        +PRWKWLAS+IP+LLSSAVL
Subjt:  LPRWKWLASLIPVLLSSAVL

TrEMBL top hitse value%identityAlignment
A0A0A0L8G7 Uncharacterized protein2.3e-5585.25Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPC DQICFFYLYKNGSDNWIPETVEISSPDIDTVKY YNSSIP DTWYGF+DCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        G LPRWKW+ASLIPVL S  +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

A0A1S3AXL4 uncharacterized protein LOC103484014 isoform X15.0e-5888.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

A0A5A7SVY1 Embryo-specific family protein5.0e-5888.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

A0A5D3E2N5 Embryo-specific family protein5.0e-5888.52Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA
        +IYEPKLEVE+ NAF KC KDIFELIGPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYFPSPSPPPPPP  VPS A
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPP--VPSVA

Query:  GCLPRWKWLASLIPVLLSSAVL
        GCLPRWKWLASLIPVL SS +L
Subjt:  GCLPRWKWLASLIPVLLSSAVL

A0A6J1E5E8 embryo-specific protein ATS3B-like2.6e-5183.47Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYF-PSPSPPPPPPVPSVAG
        +IYEPKLEVE++ AF+KCSKDIFEL GPCTDQICFFYLYKNGSD+WIPETVEISSPDIDTVKY YNSSIP DTWYGFDDCQYF P P PPP PP PS AG
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYF-PSPSPPPPPPVPSVAG

Query:  CLPRWKWLASLIPVLLSSAVL
         L R KWLA +IPVLLSSAVL
Subjt:  CLPRWKWLASLIPVLLSSAVL

SwissProt top hitse value%identityAlignment
Q681K2 Embryo-specific protein ATS3A2.3e-1538.75Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC
        ++Y  +L+  ++  F KCS D +++ GPC   +C+ YL + GSD W PE V+I    I +V + YN  +P   WYGF+ C
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC

Q6NPM5 Embryo-specific protein ATS3B2.8e-1846.25Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC
        +IY P+L+  +   F +CS D F++ GPCT QIC+ YLY++G D WIP TV+I S     V + YN+ +P   WYGF+ C
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC

Q9LYP6 Embryo-specific protein ATS31.1e-1436.8Show/hide
Query:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------
        K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S    +VK+ ++ S+P  +TWYG ++C     PS         
Subjt:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------

Query:  -----------PPPPPPVPSVAGCL
                   PPPPPP PS A  L
Subjt:  -----------PPPPPPVPSVAGCL

Arabidopsis top hitse value%identityAlignment
AT2G41475.1 Embryo-specific protein 3, (ATS3)1.6e-1638.75Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC
        ++Y  +L+  ++  F KCS D +++ GPC   +C+ YL + GSD W PE V+I    I +V + YN  +P   WYGF+ C
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC

AT5G07190.1 seed gene 38.0e-1636.8Show/hide
Query:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------
        K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S    +VK+ ++ S+P  +TWYG ++C     PS         
Subjt:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------

Query:  -----------PPPPPPVPSVAGCL
                   PPPPPP PS A  L
Subjt:  -----------PPPPPPVPSVAGCL

AT5G07190.2 seed gene 38.0e-1636.8Show/hide
Query:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------
        K+Y PKL   V       KCS + F++ G C  D IC  Y+ +NG D W+PE++EI S    +VK+ ++ S+P  +TWYG ++C     PS         
Subjt:  KIYEPKLE--VENNNAFSKCSKDIFELIGPC-TDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPG-DTWYGFDDCQYFPSPS---------

Query:  -----------PPPPPPVPSVAGCL
                   PPPPPP PS A  L
Subjt:  -----------PPPPPPVPSVAGCL

AT5G62200.1 Embryo-specific protein 3, (ATS3)2.0e-1946.25Show/hide
Query:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC
        +IY P+L+  +   F +CS D F++ GPCT QIC+ YLY++G D WIP TV+I S     V + YN+ +P   WYGF+ C
Subjt:  KIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDC

AT5G62210.1 Embryo-specific protein 3, (ATS3)2.5e-1739.6Show/hide
Query:  KIYEPKLE--VENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQY--FPSPSPPPPPPVPS
        ++  P+L+  +     F KCS D F++ G C + IC  Y+Y++G+D WIPETVEI      +VK+ +N ++P + WYG + C     P PSP  PP  PS
Subjt:  KIYEPKLE--VENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQY--FPSPSPPPPPPVPS

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAGATATATGAGCCAAAGCTGGAAGTTGAAAACAACAATGCATTTTCAAAATGCAGCAAAGACATTTTTGAACTGATAGGACCATGCACAGACCAGATATGTTT
CTTTTATCTTTACAAAAACGGCTCAGACAATTGGATACCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACATATACAACTCCTCAATCCCAGGTG
ACACATGGTATGGCTTTGATGACTGCCAATACTTTCCGTCACCATCGCCGCCACCGCCTCCGCCAGTCCCCTCCGTAGCCGGCTGCCTGCCAAGGTGGAAATGGCTTGCT
TCTCTGATCCCTGTGCTCCTCAGCAGCGCTGTACTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAGATATATGAGCCAAAGCTGGAAGTTGAAAACAACAATGCATTTTCAAAATGCAGCAAAGACATTTTTGAACTGATAGGACCATGCACAGACCAGATATGTTT
CTTTTATCTTTACAAAAACGGCTCAGACAATTGGATACCAGAGACTGTAGAAATCTCCAGCCCTGATATTGACACTGTTAAATACATATACAACTCCTCAATCCCAGGTG
ACACATGGTATGGCTTTGATGACTGCCAATACTTTCCGTCACCATCGCCGCCACCGCCTCCGCCAGTCCCCTCCGTAGCCGGCTGCCTGCCAAGGTGGAAATGGCTTGCT
TCTCTGATCCCTGTGCTCCTCAGCAGCGCTGTACTGTGAATGTGATGCTCCTTCTGTATCTTGGCCGTGGGCTTGGTGGGTTAGATGTATTTTTTATTTTTGATCCACCC
GCTCTCTGTATTTTCATGGTGTGTTTTTGAATGTTTTGATGATCATAGGAAGAGTTGTAGTTCAACTTTGATATATGTAGAATCGGATATAATGGTGTTGTGTTATGATT
ATTGAATGGAGGAATATATGTTATTATTATCGGGGCAGATTTAGTATAGGTCTGAGGCTCGAACTCCACTCAACTTTATGTTCTTTATATATATATATATAATTGACATA
TTATC
Protein sequenceShow/hide protein sequence
MVKIYEPKLEVENNNAFSKCSKDIFELIGPCTDQICFFYLYKNGSDNWIPETVEISSPDIDTVKYIYNSSIPGDTWYGFDDCQYFPSPSPPPPPPVPSVAGCLPRWKWLA
SLIPVLLSSAVL