; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G013420 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G013420
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB-block_TFIIIC domain-containing protein
Genome locationchr05:21288464..21289664
RNA-Seq ExpressionLsi05G013420
SyntenyLsi05G013420
Gene Ontology termsGO:0006384 - transcription initiation from RNA polymerase III promoter (biological process)
GO:0042791 - 5S class rRNA transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008439073.2 PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103483968 [Cucumis melo]5.2e-2782.89Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVL PQSCK LLELM+LD+HI VRKMYQSKFSGPPGILG L+ RS +ESKFVCRDHYFANPMS+SLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

XP_011651113.1 uncharacterized protein LOC101216506 [Cucumis sativus]1.6e-2885.53Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVL PQSCKKLLELM+LD+HI VRKMYQSKF GPPGILGTL+ RS +ESKFVCRDHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

XP_023539363.1 uncharacterized protein LOC111800020 [Cucurbita pepo subsp. pepo]3.0e-2782.89Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++V II+RMNVLNPQSCKKLLELM+LD H+IVRKMYQ  FSGPPGILGTLL  S+R+SKFVCRDHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

XP_038903712.1 uncharacterized protein LOC120090216 isoform X1 [Benincasa hispida]7.2e-2989.47Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVLNPQSCKKLLELM+LDA+IIVRKMYQSKF+G PGILGTLLSRSYRESKFV RDHYFANP STSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

XP_038903737.1 uncharacterized protein LOC120090216 isoform X2 [Benincasa hispida]7.2e-2989.47Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVLNPQSCKKLLELM+LDA+IIVRKMYQSKF+G PGILGTLLSRSYRESKFV RDHYFANP STSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

TrEMBL top hitse value%identityAlignment
A0A0A0LAZ9 B-block_TFIIIC domain-containing protein7.8e-2985.53Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVL PQSCKKLLELM+LD+HI VRKMYQSKF GPPGILGTL+ RS +ESKFVCRDHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

A0A1S3AXU5 LOW QUALITY PROTEIN: uncharacterized protein LOC1034839682.5e-2782.89Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++VDIIQRMNVL PQSCK LLELM+LD+HI VRKMYQSKFSGPPGILG L+ RS +ESKFVCRDHYFANPMS+SLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

A0A6J1EWQ4 uncharacterized protein LOC111439088 isoform X15.6e-2781.58Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++V II+RMNVLNPQSCKKLLELM+LD H+IVRKMYQ  FSGPPGILGTLL  S+R+SKFVC DHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

A0A6J1F242 uncharacterized protein LOC111439088 isoform X25.6e-2781.58Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++V II+RMNVLNPQSCKKLLELM+LD H+IVRKMYQ  FSGPPGILGTLL  S+R+SKFVC DHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

A0A6J1I478 uncharacterized protein LOC1114708089.6e-2780.26Show/hide
Query:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL
        ++V II+RMNVLNPQSCK+LLELM+LD H+I RKMYQ  FSGPPGILGTLL  S+R+SKFVCRDHYFANPMSTSLL
Subjt:  MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G17450.2 B-block binding subunit of TFIIIC3.2e-1453.03Show/hide
Query:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN
        +II  M++LNPQSC+KLLELM LD ++ VR+M Q+KF+GPP +L  L+S   R+ + + R H FAN
Subjt:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN

AT1G58766.1 BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1)5.7e-1656.06Show/hide
Query:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN
        +II +M+VLNPQSC+KLLELM LD ++ VR+M Q+KFSGPP +L  LL   +R+++ + R H+FAN
Subjt:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN

AT1G59077.1 BEST Arabidopsis thaliana protein match is: B-block binding subunit of TFIIIC (TAIR:AT1G59453.1)5.7e-1656.06Show/hide
Query:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN
        +II +M+VLNPQSC+KLLELM LD ++ VR+M Q+KFSGPP +L  LL   +R+++ + R H+FAN
Subjt:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN

AT1G59453.1 B-block binding subunit of TFIIIC5.7e-1656.06Show/hide
Query:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN
        +II +M+VLNPQSC+KLLELM LD ++ VR+M Q+KFSGPP +L  LL   +R+++ + R H+FAN
Subjt:  DIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFAN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTTGACATTATACAACGGATGAACGTCTTGAACCCCCAGAGTTGTAAGAAGCTGCTAGAGTTGATGATGTTAGATGCTCACATCATAGTGAGGAAAATGTATCA
AAGTAAGTTCAGTGGGCCCCCTGGTATTCTAGGGACTCTACTCAGCAGGAGCTACAGAGAGTCGAAGTTTGTTTGCCGTGATCACTACTTTGCAAATCCTATGAGTACAT
CATTGCTGTCGCCTCCCATGTTCTGCGTGCATGCTTATTCCTCAGGTAGCTTAACCAATTCATGGGAACAGAAAAAGCTGGTTCATGGAATCTCACGATGGATGCGAACT
GAGACGCCATTACGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGTTGACATTATACAACGGATGAACGTCTTGAACCCCCAGAGTTGTAAGAAGCTGCTAGAGTTGATGATGTTAGATGCTCACATCATAGTGAGGAAAATGTATCA
AAGTAAGTTCAGTGGGCCCCCTGGTATTCTAGGGACTCTACTCAGCAGGAGCTACAGAGAGTCGAAGTTTGTTTGCCGTGATCACTACTTTGCAAATCCTATGAGTACAT
CATTGCTGTCGCCTCCCATGTTCTGCGTGCATGCTTATTCCTCAGGTAGCTTAACCAATTCATGGGAACAGAAAAAGCTGGTTCATGGAATCTCACGATGGATGCGAACT
GAGACGCCATTACGATGA
Protein sequenceShow/hide protein sequence
MKVDIIQRMNVLNPQSCKKLLELMMLDAHIIVRKMYQSKFSGPPGILGTLLSRSYRESKFVCRDHYFANPMSTSLLSPPMFCVHAYSSGSLTNSWEQKKLVHGISRWMRT
ETPLR