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Lsi05G013880 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G013880
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionTPR_REGION domain-containing protein
Genome locationchr05:21760256..21768656
RNA-Seq ExpressionLsi05G013880
SyntenyLsi05G013880
Gene Ontology termsGO:0000244 - spliceosomal tri-snRNP complex assembly (biological process)
GO:0080188 - RNA-directed DNA methylation (biological process)
GO:2000630 - positive regulation of miRNA metabolic process (biological process)
GO:2000636 - positive regulation of primary miRNA processing (biological process)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR027108 - Pre-mRNA-processing factor 6/Prp1/STA1
IPR045075 - Pre-mRNA-splicing factor Syf1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOX99384.1 Pre-mRNA splicing factor-related [Theobroma cacao]1.9e-2471.25Show/hide
Query:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        +L  +S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E
Subjt:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

XP_007043553.2 PREDICTED: protein STABILIZED1 [Theobroma cacao]1.9e-2471.25Show/hide
Query:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        +L  +S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E
Subjt:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

XP_022947634.1 protein STABILIZED1 [Cucurbita moschata]1.5e-2478.87Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

XP_022970703.1 protein STABILIZED1 [Cucurbita maxima]1.5e-2478.87Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

XP_023532967.1 protein STABILIZED1 [Cucurbita pepo subsp. pepo]1.5e-2478.87Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

TrEMBL top hitse value%identityAlignment
A0A061E2W4 Pre-mRNA splicing factor-related9.4e-2571.25Show/hide
Query:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        +L  +S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E
Subjt:  MLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

A0A1U8HJS7 protein STABILIZED1-like isoform X11.2e-2474.67Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

A0A2P5B4G7 N-terminal acetyltransferase A, auxiliary subunit1.2e-2474.67Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FW LYYKFELQ   E
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

A0A6J1G7D8 protein STABILIZED17.2e-2578.87Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

A0A6J1I4P8 protein STABILIZED17.2e-2578.87Show/hide
Query:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        S + VPR QRKTKS+DAL+KCDHDPH+IAAVAKLFWH RKV+ ARTWL R VTLAP +G FWVLYYKFELQ
Subjt:  SFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

SwissProt top hitse value%identityAlignment
A1A5S1 Pre-mRNA-processing factor 63.1e-1756.52Show/hide
Query:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        R QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

O94906 Pre-mRNA-processing factor 65.3e-1755.07Show/hide
Query:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        R QR+TKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

Q2KJJ0 Pre-mRNA-processing factor 63.1e-1756.52Show/hide
Query:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        R QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

Q91YR7 Pre-mRNA-processing factor 63.1e-1756.52Show/hide
Query:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE
        R QRKTKS+DAL+KC+HDPH++ AVAKLFW  RK+  AR W  R V +   +G  W  +YKFELQ   E
Subjt:  RAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEE

Q9ZT71 Protein STABILIZED15.1e-2063.64Show/hide
Query:  PRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        PR +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKFELQ
Subjt:  PRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ

Arabidopsis top hitse value%identityAlignment
AT2G41740.1 villin 25.3e-0468.97Show/hide
Query:  QVEEIYNLSQDDLLTEEILILDTQGEVMM
        QVEEIYN +QDDLLTE+I  LDT  EV +
Subjt:  QVEEIYNLSQDDLLTEEILILDTQGEVMM

AT4G03430.1 pre-mRNA splicing factor-related3.6e-2163.64Show/hide
Query:  PRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ
        PR +RKTKSIDA++KCD DPH+  AVAKLFW  +KV  AR W +R VT+ P +G FW L+YKFELQ
Subjt:  PRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTATAATGCTTGACGTATTATCTTTTAAGACGGTACCTCGTGCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGC
TGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGCTAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACT
ACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTCAAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGATGATGAGCTCA
GAGCTAAAGCTTAAGATTCCAAATCTGCACGTCAAAAGTTCGACTGATACAAAGGCTCTTGTGAATCCCCCAGACGAGACAGGTGAAGATATGCATCTGTTCCTGTGTAC
AGTTCAATCACAACAGCAGTTATCACCCCGAAAACGACCATACCGACCGCTAGATTCTACTTACCATATCCTTCCATGGAGATCACTTGCAGATCGCCACCAAAATAACG
AGCATACAGACGGCTTATCGGAAGGCCATAACCATATCCAGCCATTGTCACCAAATCCACGGTTCCCAGATCTGGATGTTCGTCCAGAGGGTCTTTTGCAGTGGTGTAGA
GACTCCATTGAGAAATTGAAGTCTCTTGACTTTGGTGATGAACAAGAACAATACCTTAATAGTGACATCCTCAATTCCATCAGCAACTATGATTCTAACTGGAGGAGCAA
CTTTATCAGAATCCATGAAACACTCTTGCACGGCACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTATAATGCTTGACGTATTATCTTTTAAGACGGTACCTCGTGCACAACGTAAAACCAAGAGCATTGATGCACTTAGAAAATGTGATCATGATCCTCACCTTATTGC
TGCTGTGGCCAAGTTGTTTTGGCATTACAGGAAGGTTAACATAGCTAGAACTTGGCTGAAAAGGCCAGTAACACTTGCTCCAGGTGTTGGTGGTTTTTGGGTTTTATACT
ACAAATTTGAACTTCAGCAGGTAGAGGAAATTTATAATCTCTCTCAAGATGATCTGTTGACAGAGGAGATCTTGATACTTGACACTCAAGGTGAAGTGATGATGAGCTCA
GAGCTAAAGCTTAAGATTCCAAATCTGCACGTCAAAAGTTCGACTGATACAAAGGCTCTTGTGAATCCCCCAGACGAGACAGGTGAAGATATGCATCTGTTCCTGTGTAC
AGTTCAATCACAACAGCAGTTATCACCCCGAAAACGACCATACCGACCGCTAGATTCTACTTACCATATCCTTCCATGGAGATCACTTGCAGATCGCCACCAAAATAACG
AGCATACAGACGGCTTATCGGAAGGCCATAACCATATCCAGCCATTGTCACCAAATCCACGGTTCCCAGATCTGGATGTTCGTCCAGAGGGTCTTTTGCAGTGGTGTAGA
GACTCCATTGAGAAATTGAAGTCTCTTGACTTTGGTGATGAACAAGAACAATACCTTAATAGTGACATCCTCAATTCCATCAGCAACTATGATTCTAACTGGAGGAGCAA
CTTTATCAGAATCCATGAAACACTCTTGCACGGCACGTAA
Protein sequenceShow/hide protein sequence
MVIMLDVLSFKTVPRAQRKTKSIDALRKCDHDPHLIAAVAKLFWHYRKVNIARTWLKRPVTLAPGVGGFWVLYYKFELQQVEEIYNLSQDDLLTEEILILDTQGEVMMSS
ELKLKIPNLHVKSSTDTKALVNPPDETGEDMHLFLCTVQSQQQLSPRKRPYRPLDSTYHILPWRSLADRHQNNEHTDGLSEGHNHIQPLSPNPRFPDLDVRPEGLLQWCR
DSIEKLKSLDFGDEQEQYLNSDILNSISNYDSNWRSNFIRIHETLLHGT