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Lsi05G013910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G013910
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionsignal recognition particle 19 kDa protein
Genome locationchr05:21787508..21791115
RNA-Seq ExpressionLsi05G013910
SyntenyLsi05G013910
Gene Ontology termsGO:0006614 - SRP-dependent cotranslational protein targeting to membrane (biological process)
GO:0005786 - signal recognition particle, endoplasmic reticulum targeting (cellular component)
GO:0004386 - helicase activity (molecular function)
GO:0008312 - 7S RNA binding (molecular function)
InterPro domainsIPR002778 - Signal recognition particle, SRP19 subunit
IPR036521 - Signal recognition particle, subunit SRP19-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052162.1 signal recognition particle 19 kDa protein [Cucumis melo var. makuwa]4.3e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

KAG6582147.1 Signal recognition particle 19 kDa protein, partial [Cucurbita argyrosperma subsp. sororia]5.4e-1495.12Show/hide
Query:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        E GWNMDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKA
Subjt:  EFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

KGN54616.2 hypothetical protein Csa_018066 [Cucumis sativus]1.7e-15100Show/hide
Query:  SEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        SEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  SEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

XP_004147628.1 signal recognition particle 19 kDa protein [Cucumis sativus]4.3e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

XP_038879562.1 signal recognition particle 19 kDa protein [Benincasa hispida]4.3e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

TrEMBL top hitse value%identityAlignment
A0A0A0L2H8 Uncharacterized protein2.1e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

A0A0A0L5F9 Uncharacterized protein8.9e-2376.54Show/hide
Query:  MACYGLERECDHWAQ-CQGFKPTG--AFLS------SGISEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        +A  GLERECDHWAQ  QG KPT   AFL        GI EFG NMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MACYGLERECDHWAQ-CQGFKPTG--AFLS------SGISEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

A0A1S3AYC2 signal recognition particle 19 kDa protein2.1e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

A0A5D3BZY9 Signal recognition particle 19 kDa protein2.1e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

A0A6J1IY39 signal recognition particle 19 kDa protein2.1e-11100Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

SwissProt top hitse value%identityAlignment
P09132 Signal recognition particle 19 kDa protein6.9e-0466.67Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKA

P49964 Signal recognition particle 19 kDa protein1.2e-0566.67Show/hide
Query:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        +IK+W V+YP+Y+NSKKT+AEGRRI   KA
Subjt:  NIKRWVVLYPIYINSKKTIAEGRRIGVSKA

Q3ZBG7 Signal recognition particle 19 kDa protein6.9e-0466.67Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKA

Q943Z6 Signal recognition particle 19 kDa protein7.1e-0972.22Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA

Q9D7A6 Signal recognition particle 19 kDa protein6.9e-0466.67Show/hide
Query:  RWVVLYPIYINSKKTIAEGRRIGVSKA
        R++ +YP Y+N+KKTIAEGRRI +SKA
Subjt:  RWVVLYPIYINSKKTIAEGRRIGVSKA

Arabidopsis top hitse value%identityAlignment
AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative5.0e-1072.22Show/hide
Query:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA
        MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+
Subjt:  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATAT
GGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCATGTTATGGACTCGAACGTGAGTGCGACCACTGGGCACAGTGCCAAGGATTCAAGCCCACCGGTGCATTTCTGAGTAGCGGCATTTCTGAATTTGGTTGGAATAT
GGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTATTGTATCCAATCTATATTAATTCAAAGAAGACAATAGCTGAAGGAAGACGTATTGGTGTTAGTAAAGCATGAA
AACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGGAGAACAAAGAAGCAGGAGCCTGCATCCTCATCAACAGCAGCAGGACCTTCAAAAGGCAAGGGT
GGAAGAAAGAAGAAATAGTTGCATTATGTAATTGCAAGAACCAGATTGTTATCGACCAGGCAGGCGGTTTCGTTTTCAGGTCTTAGTTCATAATTCTTGAGACCTTTGAG
TATTGGTGTTCTACCCCAGCCCCCATCCAAAACGAAAACTAACACAGTGGTCTGAATGTTTTTGTGAAGAGTCATTGATACTTTTTTCTTGATGGTCGATTCAATGACTG
AAAAAAATAGTCACGGAAAGTAGTTGTGACAATTTTTAAGTGTCGTGGAATCTCACATTTGGTGTAGTATGGGTTTGTCTTAGAACAATTTTGTAAAAGAGTGGATCATG
AAGTTTTACTGAGATAAAGTTGGTGATAGGAGAAAAGGATGGTGGATGAGAATTAAGTTGAATGATCCACTCTTTTCTAAATCCTTTGAGATTGGAGGTGAAATAACCAA
TATATGAATATGATTTACAGGTCTGGAGATTGATA
Protein sequenceShow/hide protein sequence
MACYGLERECDHWAQCQGFKPTGAFLSSGISEFGWNMDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKA