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Lsi05G013940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G013940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA repair protein RecO
Genome locationchr05:21800291..21803011
RNA-Seq ExpressionLsi05G013940
SyntenyLsi05G013940
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER36998.1 DNA repair protein RecO [Striga asiatica]2.0e-0436.16Show/hide
Query:  NVHTHQLHRIVFSETA--RRRSTVRQQMEHSERVTGAVEFIAGMAGEIEAEWLRIGESIEQFRRAKTVSGDGGMMIDWMSVMDGASRHRWIVDHHGLLV-
        +V  H+  RIV  E A  RRR  V +  E  E   G VE +A +AGE+EAE   + E            G GG + +     DG  R R   D  GL + 
Subjt:  NVHTHQLHRIVFSETA--RRRSTVRQQMEHSERVTGAVEFIAGMAGEIEAEWLRIGESIEQFRRAKTVSGDGGMMIDWMSVMDGASRHRWIVDHHGLLV-

Query:  ---VIDGLY-FVTAGGSEEEEI-GGAIEHMAELRRSAAVVDSEGDVRQGEANVRDLGKSNGSKKSSG--HGNLRFRW
           V  GL     AGG EEE+  GGA+E  AEL  +AAVVD +G +RQ  A   D+ +   +  ++   H NL  R+
Subjt:  ---VIDGLY-FVTAGGSEEEEI-GGAIEHMAELRRSAAVVDSEGDVRQGEANVRDLGKSNGSKKSSG--HGNLRFRW

PON64834.1 hypothetical protein PanWU01x14_120110 [Parasponia andersonii]5.3e-1040Show/hide
Query:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE
        ME  E + GAV+ +A MAGE+EAE   + E      +IE+ +   +V G    GG+ I  + V+    +GA  H  +V HHGLLVV+DG + V A   +E
Subjt:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE

Query:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA
        E+   A+EH+ EL R A VV +E    G+V  G A
Subjt:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA

PON93064.1 hypothetical protein TorRG33x02_109700 [Trema orientale]5.0e-0838.52Show/hide
Query:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE
        ME  E + GAV+ +A +AGE+EAE   + E      +IE+ +    V G    GG+ I  + V+    +GA  H  +V HH LLVV+DG + V A   +E
Subjt:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE

Query:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA
        E+   A+EH+ EL R A VV +E    G+V  G A
Subjt:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA

TrEMBL top hitse value%identityAlignment
A0A2P5CUT6 Uncharacterized protein2.6e-1040Show/hide
Query:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE
        ME  E + GAV+ +A MAGE+EAE   + E      +IE+ +   +V G    GG+ I  + V+    +GA  H  +V HHGLLVV+DG + V A   +E
Subjt:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE

Query:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA
        E+   A+EH+ EL R A VV +E    G+V  G A
Subjt:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA

A0A2P5F5K1 Uncharacterized protein2.4e-0838.52Show/hide
Query:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE
        ME  E + GAV+ +A +AGE+EAE   + E      +IE+ +    V G    GG+ I  + V+    +GA  H  +V HH LLVV+DG + V A   +E
Subjt:  MEHSERVTGAVEFIAGMAGEIEAEWLRIGE------SIEQFRRAKTVSGD---GGMMIDWMSVM----DGASRHRWIVDHHGLLVVIDGLYFVTAGGSEE

Query:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA
        E+   A+EH+ EL R A VV +E    G+V  G A
Subjt:  EEIGGAIEHMAELRRSAAVVDSE----GDVRQGEA

A0A5A7PWH6 DNA repair protein RecO9.5e-0536.16Show/hide
Query:  NVHTHQLHRIVFSETA--RRRSTVRQQMEHSERVTGAVEFIAGMAGEIEAEWLRIGESIEQFRRAKTVSGDGGMMIDWMSVMDGASRHRWIVDHHGLLV-
        +V  H+  RIV  E A  RRR  V +  E  E   G VE +A +AGE+EAE   + E            G GG + +     DG  R R   D  GL + 
Subjt:  NVHTHQLHRIVFSETA--RRRSTVRQQMEHSERVTGAVEFIAGMAGEIEAEWLRIGESIEQFRRAKTVSGDGGMMIDWMSVMDGASRHRWIVDHHGLLV-

Query:  ---VIDGLY-FVTAGGSEEEEI-GGAIEHMAELRRSAAVVDSEGDVRQGEANVRDLGKSNGSKKSSG--HGNLRFRW
           V  GL     AGG EEE+  GGA+E  AEL  +AAVVD +G +RQ  A   D+ +   +  ++   H NL  R+
Subjt:  ---VIDGLY-FVTAGGSEEEEI-GGAIEHMAELRRSAAVVDSEGDVRQGEANVRDLGKSNGSKKSSG--HGNLRFRW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAAAGGCCATACCGCAATCCCTAGTATGATTAGAAGAAATGGAGCAGAGGCACAACAATCCTTCCGTTTCAGTATCAAATCCACAGCTTCCTCCCGATTTCAAGC
ACCGATCGCATCCCAAATCCGTAACCGCAAAGCTCAATTTCATACCGTATTCCCAATCCAAAGCCCCTACTCCTTTCAGATTCTCCGAATTCAACACCGTCGTGTAATGC
GTGCAATCCAGAATGTTCATACTCATCAACTTCACCGTATCGTATTCAGTGAAACAGCACGGCGGCGAAGTACTGTTCGTCAACAGATGGAACACTCGGAACGCGTTACA
GGCGCCGTAGAGTTCATCGCAGGAATGGCCGGAGAAATTGAAGCAGAGTGGTTGAGGATCGGAGAATCGATCGAGCAGTTTAGGAGAGCGAAGACGGTGTCTGGTGACGG
CGGAATGATGATCGATTGGATGTCGGTCATGGATGGAGCAAGTCGACATCGCTGGATCGTAGATCACCATGGATTGCTTGTCGTAATCGATGGATTGTACTTTGTAACTG
CCGGAGGGAGTGAGGAAGAAGAGATCGGTGGAGCAATTGAACATATGGCGGAATTGAGGCGCTCCGCAGCCGTCGTCGATTCCGAAGGGGATGTCCGGCAAGGTGAGGCG
AATGTGAGAGATTTAGGTAAAAGTAATGGTAGTAAGAAGAGTAGCGGCCATGGAAATTTGAGATTCCGGTGGCCGGAGATGGCGGAAAGCGGTAGCGACGCCATGGAGTT
CATGAAAAGCAATAATTTCTGGAGGAAAAGGAGAACAGCTCAGAGCAAGGAATTGAGAATTTCGAGGAACAATTATGAACTGAAATTGCGGTGTTTTCTTCCTCAACTTT
TCGAGAGGAGATCATGGAACGACAATATGATCATAACTCAATTAGTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATAAAGGCCATACCGCAATCCCTAGTATGATTAGAAGAAATGGAGCAGAGGCACAACAATCCTTCCGTTTCAGTATCAAATCCACAGCTTCCTCCCGATTTCAAGC
ACCGATCGCATCCCAAATCCGTAACCGCAAAGCTCAATTTCATACCGTATTCCCAATCCAAAGCCCCTACTCCTTTCAGATTCTCCGAATTCAACACCGTCGTGTAATGC
GTGCAATCCAGAATGTTCATACTCATCAACTTCACCGTATCGTATTCAGTGAAACAGCACGGCGGCGAAGTACTGTTCGTCAACAGATGGAACACTCGGAACGCGTTACA
GGCGCCGTAGAGTTCATCGCAGGAATGGCCGGAGAAATTGAAGCAGAGTGGTTGAGGATCGGAGAATCGATCGAGCAGTTTAGGAGAGCGAAGACGGTGTCTGGTGACGG
CGGAATGATGATCGATTGGATGTCGGTCATGGATGGAGCAAGTCGACATCGCTGGATCGTAGATCACCATGGATTGCTTGTCGTAATCGATGGATTGTACTTTGTAACTG
CCGGAGGGAGTGAGGAAGAAGAGATCGGTGGAGCAATTGAACATATGGCGGAATTGAGGCGCTCCGCAGCCGTCGTCGATTCCGAAGGGGATGTCCGGCAAGGTGAGGCG
AATGTGAGAGATTTAGGTAAAAGTAATGGTAGTAAGAAGAGTAGCGGCCATGGAAATTTGAGATTCCGGTGGCCGGAGATGGCGGAAAGCGGTAGCGACGCCATGGAGTT
CATGAAAAGCAATAATTTCTGGAGGAAAAGGAGAACAGCTCAGAGCAAGGAATTGAGAATTTCGAGGAACAATTATGAACTGAAATTGCGGTGTTTTCTTCCTCAACTTT
TCGAGAGGAGATCATGGAACGACAATATGATCATAACTCAATTAGTATAA
Protein sequenceShow/hide protein sequence
MHKGHTAIPSMIRRNGAEAQQSFRFSIKSTASSRFQAPIASQIRNRKAQFHTVFPIQSPYSFQILRIQHRRVMRAIQNVHTHQLHRIVFSETARRRSTVRQQMEHSERVT
GAVEFIAGMAGEIEAEWLRIGESIEQFRRAKTVSGDGGMMIDWMSVMDGASRHRWIVDHHGLLVVIDGLYFVTAGGSEEEEIGGAIEHMAELRRSAAVVDSEGDVRQGEA
NVRDLGKSNGSKKSSGHGNLRFRWPEMAESGSDAMEFMKSNNFWRKRRTAQSKELRISRNNYELKLRCFLPQLFERRSWNDNMIITQLV