CuGenDBv2

Gene ID	Lsi05G013980
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Detected protein of confused Function
Genome location	chr05:21820603..21823249
RNA-Seq Expression	Lsi05G013980
Synteny	Lsi05G013980
Gene Ontology terms	NA
InterPro domains	IPR008011 - Complex 1 LYR protein

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022138283.1 uncharacterized protein LOC111009499 [Momordica charantia]

3.0e-37

80.56

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQ                 QHNTEL+V+MVRQQFRKNM ETDPEKIQKLKDDAARGLINHILYESER+S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFSQSS
Subjt:  GRKFSQSS

XP_022972196.1 uncharacterized protein LOC111470803 [Cucurbita maxima]

3.7e-35

75.93

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 +QHNT+L+V+MV+QQFRKNM ETDPEKIQKLKDDAARGLINHILYESER++
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRK SQSS
Subjt:  GRKFSQSS

XP_030973563.1 uncharacterized protein LOC115993736 [Quercus lobata]

4.9e-35

75.93

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 +QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINHILYESE+MS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFS+S+
Subjt:  GRKFSQSS

XP_038878962.1 uncharacterized protein LOC120071039 [Benincasa hispida]

1.6e-38

83.33

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQ                 QHNTELLV+MVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFSQSS
Subjt:  GRKFSQSS

XP_040992711.1 uncharacterized protein LOC121239516 [Juglans microcarpa x Juglans regia]

3.7e-35

76.64

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 +QHNTELLV MVRQQF++NM+ETDPE+IQKLKDDAARGLINHILYESE+MS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQS
        GRKFS+S
Subjt:  GRKFSQS

TrEMBL top hits

e value

%identity

Alignment

A0A061EP84 Uncharacterized protein isoform 1

4.0e-35

76.85

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 KQHNT L+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINHILYESE+MS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFS+SS
Subjt:  GRKFSQSS

A0A6J1C9Q7 uncharacterized protein LOC111009499

1.5e-37

80.56

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGHQ                 QHNTEL+V+MVRQQFRKNM ETDPEKIQKLKDDAARGLINHILYESER+S
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFSQSS
Subjt:  GRKFSQSS

A0A6J1I5B4 uncharacterized protein LOC111470803

1.8e-35

75.93

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 +QHNT+L+V+MV+QQFRKNM ETDPEKIQKLKDDAARGLINHILYESER++
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRK SQSS
Subjt:  GRKFSQSS

A0A7N2R6B7 Uncharacterized protein

2.4e-35

75.93

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRAKYIGH                 +QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINHILYESE+MS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFS+S+
Subjt:  GRKFSQSS

D7T656 Uncharacterized protein

4.0e-35

75.93

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQTALPPELANNVIRLYRECLRRA+YIGHQ                 QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINHILYESE+MS
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        GRKFS+ S
Subjt:  GRKFSQSS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G17300.1 unknown protein

1.3e-33

67.59

Show/hide

Query:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS
        MPSLQT+LPPELANNV+RLYRECLRRAK+IG Q                 QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH+L+ES +++
Subjt:  MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMS

Query:  GRKFSQSS
        G K SQ S
Subjt:  GRKFSQSS

AT3G17300.2 unknown protein

2.3e-19

Show/hide

Query:  VWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS
        +W+   EN V    +  QHNTEL+V MVRQQF+K+M ETDPEKIQKLKDDAARGLINH+L+ES +++G K SQ S
Subjt:  VWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGAGCCAAGTATATTGGCCATCAGGTATGGATGTG
CAAAATGGAAAATCCTGTTCATTTCAGCCCATCCTTCAAACAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAACATGCGTGAGACTGATC
CAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATACGAATCTGAGAGAATGTCAGGTCGAAAATTCAGCCAAAGTTCTTGA

mRNA sequence

Show/hide mRNA sequence

TCTTAAGCTCCCACACTTTTCTGCGACTTTCATCAATTCTTCAAATCAAATTCGGGAGCTTTGATTTTCTTCATCCTTTTCCTCTTTTTCCTCTGTCAAGCGCGTCACAA
GCCACCAAGAGGAGCAGGAGGAGTGCGTTTTTGGTGGTTTTGAATGTCTGCATTCACGATTGGACGTCTACAGAAGCTTAGATGCATAAAAGTTTAGGGTTTTATTTGTG
GTGTGAAAAGGGCGGAAATGCCATCTCTACAGACTGCTCTACCTCCTGAGCTTGCGAATAATGTCATTAGGCTTTACCGCGAGTGCCTTCGAAGAGCCAAGTATATTGGC
CATCAGGTATGGATGTGCAAAATGGAAAATCCTGTTCATTTCAGCCCATCCTTCAAACAACATAACACCGAGCTTCTTGTTACTATGGTGAGGCAACAATTCAGAAAAAA
CATGCGTGAGACTGATCCAGAGAAGATTCAGAAGTTGAAAGATGATGCTGCTAGGGGACTTATAAACCATATTCTATACGAATCTGAGAGAATGTCAGGTCGAAAATTCA
GCCAAAGTTCTTGATGTTATATGGAGAATGGCATCGAGTAAAAAGGTCTCCTTTGAAATTTCAGATATTGTAGGAATAAGATGGCTGATGATGAAAGTACTCCTCGGAGG
TTATTTTTGCATTTCCTTGTTTATTTCTACGATTTGTTAAAGGAAAACGTCCATTTTACAGTAATTGTTGAACTTTTCTCCTTCTACAATCTGCATTTTATTGTGTAAAG
TGGATGTTTAAGGAAGATATAACATACATTGTTCAACTCTGAAGTCCAGATATTACTTTAATATGGTTCTTGTTCTTTTTTTT

Protein sequence

Show/hide protein sequence

MPSLQTALPPELANNVIRLYRECLRRAKYIGHQVWMCKMENPVHFSPSFKQHNTELLVTMVRQQFRKNMRETDPEKIQKLKDDAARGLINHILYESERMSGRKFSQSS

Lsi05G013980 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome