CuGenDBv2

Gene ID	Lsi05G015030
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	F-box-like domain-containing protein
Genome location	chr05:22847194..22850156
RNA-Seq Expression	Lsi05G015030
Synteny	Lsi05G015030
Gene Ontology terms	GO:0000209 - protein polyubiquitination (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0019005 - SCF ubiquitin ligase complex (cellular component)
InterPro domains	IPR039588 - F-box only protein 4

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004134187.1 uncharacterized protein LOC101218430 [Cucumis sativus]

1.4e-107

92.72

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSSSSTLAQS ISMGWKSFYIQRHIEI GRAQAAVKF+EQCSP+TPIEGGDYLRTIGGLWDLKLSF+DAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQ+MEALQR KI ERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAEL+TEEGEDVLGVLSRGAVHEVLRVQVSVGD FA H
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WSQQST
        WS+QST
Subjt:  WSQQST

XP_008438803.1 PREDICTED: uncharacterized protein LOC103483796 [Cucumis melo]

7.4e-109

93.2

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKF+EQCSP+TPIEGGDYLRTIGGLWDLKLSF+DAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQ++EALQR KI ERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAEL+TEEGEDVLGVLSRGAVHEVLRVQVSVGD FA H
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WSQQST
        WS+QST
Subjt:  WSQQST

XP_022979915.1 uncharacterized protein LOC111479465 isoform X1 [Cucurbita maxima]

2.2e-92

83.5

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Query:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL
        +QLCDSDYLWESL RERWPYIN     GSSSSTLAQSPISMGWKSFYIQRHIEI  RAQAAVKFIEQ SP++PIEGGDYLRTI GLWDLKLSFIDAQMVL
Subjt:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL

Query:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG
        FKP LNELLNLVGLHYC++WLQ   N+++EAL+R KI+ER + VKWWKLGRWFYGFRMRDEQQTRRVSLA LV EEGEDVL VLSRGAV+EVLRVQVSVG
Subjt:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG

Query:  DPFASH
        +PFAS+
Subjt:  DPFASH

XP_022979916.1 uncharacterized protein LOC111479465 isoform X2 [Cucurbita maxima]

2.2e-92

83.5

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Query:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL
        +QLCDSDYLWESL RERWPYIN     GSSSSTLAQSPISMGWKSFYIQRHIEI  RAQAAVKFIEQ SP++PIEGGDYLRTI GLWDLKLSFIDAQMVL
Subjt:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL

Query:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG
        FKP LNELLNLVGLHYC++WLQ   N+++EAL+R KI+ER + VKWWKLGRWFYGFRMRDEQQTRRVSLA LV EEGEDVL VLSRGAV+EVLRVQVSVG
Subjt:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG

Query:  DPFASH
        +PFAS+
Subjt:  DPFASH

XP_038893805.1 uncharacterized protein LOC120082593 [Benincasa hispida]

3.1e-107

94.55

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSS STLAQSPISMGWKS YIQRHIEILGRAQAAVKFIEQCSP+TPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQVMEALQR K+ ER+ICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVS GDPFASH
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WS
        WS
Subjt:  WS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L7T9 F-box domain-containing protein

6.8e-108

92.72

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSSSSTLAQS ISMGWKSFYIQRHIEI GRAQAAVKF+EQCSP+TPIEGGDYLRTIGGLWDLKLSF+DAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQ+MEALQR KI ERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAEL+TEEGEDVLGVLSRGAVHEVLRVQVSVGD FA H
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WSQQST
        WS+QST
Subjt:  WSQQST

A0A1S3AXY1 uncharacterized protein LOC103483796

3.6e-109

93.2

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKF+EQCSP+TPIEGGDYLRTIGGLWDLKLSF+DAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQ++EALQR KI ERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAEL+TEEGEDVLGVLSRGAVHEVLRVQVSVGD FA H
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WSQQST
        WS+QST
Subjt:  WSQQST

A0A5A7U795 F-box-like domain-containing protein

3.6e-109

93.2

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Query:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN
        QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKF+EQCSP+TPIEGGDYLRTIGGLWDLKLSF+DAQMVLFKPQLN
Subjt:  QLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLN

Query:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH
        ELLNLVGLHYCR WLQ  ANQ++EALQR KI ERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAEL+TEEGEDVLGVLSRGAVHEVLRVQVSVGD FA H
Subjt:  ELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASH

Query:  WSQQST
        WS+QST
Subjt:  WSQQST

A0A6J1IS41 uncharacterized protein LOC111479465 isoform X2

1.1e-92

83.5

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Query:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL
        +QLCDSDYLWESL RERWPYIN     GSSSSTLAQSPISMGWKSFYIQRHIEI  RAQAAVKFIEQ SP++PIEGGDYLRTI GLWDLKLSFIDAQMVL
Subjt:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL

Query:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG
        FKP LNELLNLVGLHYC++WLQ   N+++EAL+R KI+ER + VKWWKLGRWFYGFRMRDEQQTRRVSLA LV EEGEDVL VLSRGAV+EVLRVQVSVG
Subjt:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG

Query:  DPFASH
        +PFAS+
Subjt:  DPFASH

A0A6J1IUP6 uncharacterized protein LOC111479465 isoform X1

1.1e-92

83.5

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Query:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL
        +QLCDSDYLWESL RERWPYIN     GSSSSTLAQSPISMGWKSFYIQRHIEI  RAQAAVKFIEQ SP++PIEGGDYLRTI GLWDLKLSFIDAQMVL
Subjt:  EQLCDSDYLWESLARERWPYIN-----GSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVL

Query:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG
        FKP LNELLNLVGLHYC++WLQ   N+++EAL+R KI+ER + VKWWKLGRWFYGFRMRDEQQTRRVSLA LV EEGEDVL VLSRGAV+EVLRVQVSVG
Subjt:  FKPQLNELLNLVGLHYCRTWLQ--ANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVG

Query:  DPFASH
        +PFAS+
Subjt:  DPFASH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G15563.1 unknown protein

6.9e-28

41.45

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Query:  RHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLNELLNLVGLHYCRTWL--QANQVMEALQRSKITERHICVKWWKL
        +H E+  RA   +K++ +      +E G YL  +  +  ++  F D ++  FKP L+ LLNL+GL YC   L  +  QV++ L++  I+E+ + VKW  L
Subjt:  RHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLNELLNLVGLHYCRTWL--QANQVMEALQRSKITERHICVKWWKL

Query:  GRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGD
        GRW  G RMRD+  +R+VSL ++VT + E VL VL RG VHEVLRV +S  D
Subjt:  GRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGD

Sequences

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CDS sequence

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mRNA sequence

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ATGGAGCAACTCTGCGATTCCGATTACCTATGGGAATCTCTCGCAAGGGAAAGATGGCCTTATATCAATGGTTCTTCTTCCTCAACTCTCGCACAATCCCCCATCTCCAT
GGGATGGAAAAGCTTTTACATTCAGAGACATATTGAGATATTGGGAAGAGCCCAAGCAGCGGTAAAGTTTATAGAACAATGCTCTCCCGCTACCCCAATTGAGGGCGGAG
ACTATCTCAGGACAATTGGTGGCTTGTGGGATTTGAAGCTCAGTTTTATAGATGCTCAGATGGTGCTTTTCAAACCTCAACTTAATGAGCTACTGAACTTGGTTGGCTTA
CACTACTGTAGAACTTGGCTTCAAGCCAATCAAGTCATGGAAGCACTCCAAAGATCCAAGATAACAGAGAGGCATATATGTGTGAAATGGTGGAAGCTAGGAAGATGGTT
TTATGGATTCCGCATGAGAGACGAACAACAAACTCGTCGAGTCTCTCTGGCAGAACTCGTGACGGAAGAAGGGGAGGATGTTCTTGGGGTGCTCAGCCGAGGTGCCGTTC
ACGAGGTGCTTCGAGTTCAGGTTTCTGTAGGTGATCCCTTTGCCAGTCACTGGTCTCAGCAAAGCACATAAAATAAAAAACACCCTTAGCATCTCCCACGTAAGCTTTCT
GCAACTGCAACGATCTATATGCTAATAGTTGTTTCATCATGTATTTCAAATAATTGCTTGTAGATTATTCATGCAGATATCTAAATGTAAATATTTGTTGTCCATTCAGA
TTTGATTTATACTAAGTTATAGTTCACCAGCATATGCACATCAATTTACTGGTGTATTTTGTAAATTATTAAGAGCTTTTGGCTCAAAGTATTGGGTTTCTGACAATCTT
ATTCTTTAGTATTTCTATATCTAAGTACATTATACAAAGGGTATCTTTAAATAATTATGTTTCTG

Protein sequence

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MEQLCDSDYLWESLARERWPYINGSSSSTLAQSPISMGWKSFYIQRHIEILGRAQAAVKFIEQCSPATPIEGGDYLRTIGGLWDLKLSFIDAQMVLFKPQLNELLNLVGL
HYCRTWLQANQVMEALQRSKITERHICVKWWKLGRWFYGFRMRDEQQTRRVSLAELVTEEGEDVLGVLSRGAVHEVLRVQVSVGDPFASHWSQQST

Lsi05G015030 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome