CuGenDBv2

Gene ID	Lsi05G015080
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	BHLH domain-containing protein
Genome location	chr05:22877280..22877980
RNA-Seq Expression	Lsi05G015080
Synteny	Lsi05G015080
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6582238.1 Transcription factor basic helix-loop-helix 95, partial [Cucurbita argyrosperma subsp. sororia]

3.6e-84

90.91

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK
        K  ESVTMLP+TNSDS GGGVIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG VENTIEQIRNDILSLKK
Subjt:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

XP_004134190.1 transcription factor bHLH95 [Cucumis sativus]

1.4e-83

87.62

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Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFDVL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGG----GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSL
        KSSESV +LPNTNSDSSGG    GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTASVHG VENTIEQIRNDIL L
Subjt:  KSSESVTMLPNTNSDSSGG----GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSL

Query:  KK
        KK
Subjt:  KK

XP_016898986.1 PREDICTED: transcription factor bHLH95-like [Cucumis melo]

2.7e-84

88.56

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFDVL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK
        KSSESVT+LPN+NSDSSGG   GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTASVHG VENTIEQIRNDILSLK
Subjt:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK

Query:  K
        K
Subjt:  K

XP_022955986.1 uncharacterized protein LOC111457820 [Cucurbita moschata]

3.6e-84

90.91

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK
        K  ESVTMLP+TNSDS GGGVIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG VENTIEQIRNDILSLKK
Subjt:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

XP_038885840.1 transcription factor bHLH95-like [Benincasa hispida]

9.7e-90

95.52

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEACTDSVVPLFPLILPVHQSEATEKKASASRKR RALEANGGVQKK REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSS---GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK
        KSSESVTMLP+TNSDSS   GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHG VENTIE I+NDILSLK
Subjt:  KSSESVTMLPNTNSDSS---GGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5R7 BHLH domain-containing protein

6.6e-84

87.62

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEAC+DSV+PLFPLILPVH  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFDVL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGG----GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSL
        KSSESV +LPNTNSDSSGG    GVIVS+SGNIVLFG+IIASVQRG+VTQIL+VFERH+AEVLAANV VSHGNLTLTVTASVHG VENTIEQIRNDIL L
Subjt:  KSSESVTMLPNTNSDSSGG----GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSL

Query:  KK
        KK
Subjt:  KK

A0A1S4DSM0 transcription factor bHLH95-like

1.3e-84

88.56

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFDVL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK
        KSSESVT+LPN+NSDSSGG   GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTASVHG VENTIEQIRNDILSLK
Subjt:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK

Query:  K
        K
Subjt:  K

A0A5A7U767 Transcription factor bHLH95-like

1.3e-84

88.56

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEAC+DSVVPLFPLILP+H  EATEK+ASASRKR RALEANGGVQKK +EKRKEMSESFDVL+SLVPNLSPKATRETIVS  IQFIEFLQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK
        KSSESVT+LPN+NSDSSGG   GVIVS+SGNIVLFG+IIASVQRGMVTQIL+VFERH+ EVLAANV VSHGNLTLTVTASVHG VENTIEQIRNDILSLK
Subjt:  KSSESVTMLPNTNSDSSGG---GVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLK

Query:  K
        K
Subjt:  K

A0A6J1GWN9 uncharacterized protein LOC111457820

1.7e-84

90.91

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGGVQ+KGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK
        K  ESVTMLP+TNSDS GGGVIVSVS NIVLFGII ASV+RGMVTQILM FERHQAEVLAANVAVSHGNLTLTVTASVHG VENTIEQIRNDILSLKK
Subjt:  KSSESVTMLPNTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

A0A6J1IS55 uncharacterized protein LOC111479473

3.1e-81

87.68

Show/hide

Query:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK
        MEACTDSVV L P ILPVHQSEA E KAS SRKR RALEANGG Q+KGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIE LQKQLMRLEMEK
Subjt:  MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK

Query:  KSSESVTMLPNTNSDSSG-----GGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILS
        K  ESVTMLP+TNSDS G     GGVIVSVS NIVLFGII ASV+RGMVT+ILM FERHQAEVLAANVAVSHGNLTLTVTASVHG VENTIEQIRNDILS
Subjt:  KSSESVTMLPNTNSDSSG-----GGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILS

Query:  LKK
        LKK
Subjt:  LKK

SwissProt top hits

e value

%identity

Alignment

Q9FXA3 Transcription factor bHLH95

1.3e-04

36.26

Show/hide

Query:  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSSESVTMLPNT------NSDSSGGGVIVSVSGN
        RE+RK+M + F  L +L+P L PKA + TIV E +  I+ L++ L +LEM+K      SS S    P T      +S SS   ++  +S +
Subjt:  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSSESVTMLPNT------NSDSSGGGVIVSVSGN

Arabidopsis top hits

e value

%identity

Alignment

AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

9.3e-06

36.26

Show/hide

Query:  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSSESVTMLPNT------NSDSSGGGVIVSVSGN
        RE+RK+M + F  L +L+P L PKA + TIV E +  I+ L++ L +LEM+K      SS S    P T      +S SS   ++  +S +
Subjt:  REKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEK-----KSSESVTMLPNT------NSDSSGGGVIVSVSGN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGCCTGCACAGATTCTGTGGTTCCACTTTTTCCCCTCATATTGCCCGTGCATCAGTCTGAAGCCACTGAAAAGAAGGCTTCGGCCTCAAGAAAGCGTAGCAGAGC
TCTGGAAGCCAACGGCGGTGTACAGAAGAAAGGGAGGGAGAAGAGGAAAGAGATGAGTGAGAGTTTCGATGTACTTCAATCTCTTGTCCCGAATCTCTCTCCTAAGGCTA
CGAGAGAGACTATTGTTTCCGAAACGATCCAGTTCATCGAGTTTCTACAGAAGCAGTTGATGAGGCTGGAAATGGAGAAGAAATCATCGGAATCGGTGACGATGCTTCCG
AATACGAACTCGGATTCATCAGGCGGCGGCGTCATTGTCTCGGTCTCCGGCAACATTGTGTTGTTTGGAATTATTATTGCTTCTGTTCAACGAGGTATGGTGACACAGAT
TTTAATGGTGTTTGAAAGACACCAGGCTGAAGTTCTTGCAGCGAATGTTGCAGTCAGCCATGGCAATTTAACTTTAACAGTCACAGCTTCTGTACACGGTAACGTAGAGA
ATACCATAGAGCAGATTAGAAACGATATCTTAAGCTTAAAGAAGTAA

mRNA sequence

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Protein sequence

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MEACTDSVVPLFPLILPVHQSEATEKKASASRKRSRALEANGGVQKKGREKRKEMSESFDVLQSLVPNLSPKATRETIVSETIQFIEFLQKQLMRLEMEKKSSESVTMLP
NTNSDSSGGGVIVSVSGNIVLFGIIIASVQRGMVTQILMVFERHQAEVLAANVAVSHGNLTLTVTASVHGNVENTIEQIRNDILSLKK

Lsi05G015080 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome