; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G015250 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G015250
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionE3 ubiquitin-protein ligase RBBP6 isoform X2
Genome locationchr05:23056800..23057987
RNA-Seq ExpressionLsi05G015250
SyntenyLsi05G015250
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134201.1 uncharacterized protein LOC101221899 isoform X2 [Cucumis sativus]1.1e-4286.4Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN
        RLAHPGGPLKTNKAAALAKFL RKL+QDPNALSSINPQILDLAVRNAKASV S     SGTNI HVD+FDDPEASFDEGESMNSEP+KQK K KKKK KN
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN

Query:  KKNKRQKIVEDSGCGVVKKPKKKLR
        KKNKRQKIVEDS CGV  KPKKKLR
Subjt:  KKNKRQKIVEDSGCGVVKKPKKKLR

XP_022956118.1 uncharacterized protein LOC111457905 isoform X1 [Cucurbita moschata]1.4e-4278.99Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLR
         KK KKN     KKNKRQ KIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLR

XP_022956119.1 uncharacterized protein LOC111457905 isoform X2 [Cucurbita moschata]5.8e-4479.56Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLR
         KK KKN     KKNKRQKIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLR

XP_022979960.1 uncharacterized protein LOC111479494 [Cucurbita maxima]3.4e-4480.74Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLR
         KK KKN   KKNKRQKIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLR

XP_038890855.1 uncharacterized protein LOC120080295 [Benincasa hispida]8.7e-4889.52Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNKKKKKKKNK
        RLAHPGGPLKTNKAAALAKFL+RKLHQDPNALSSI+PQILDLAVRNAKASVLS G+SGSGTNI HVD+FDDPEAS D+GE+MNSEPR+QK KKKKKKKNK
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNKKKKKKKNK

Query:  KNKRQKIVEDSGCGVVKKPKKKLR
        KNKRQKIV DSGCGV KKPKKKLR
Subjt:  KNKRQKIVEDSGCGVVKKPKKKLR

TrEMBL top hitse value%identityAlignment
A0A0A0LAK0 Uncharacterized protein5.3e-4386.4Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN
        RLAHPGGPLKTNKAAALAKFL RKL+QDPNALSSINPQILDLAVRNAKASV S     SGTNI HVD+FDDPEASFDEGESMNSEP+KQK K KKKK KN
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN

Query:  KKNKRQKIVEDSGCGVVKKPKKKLR
        KKNKRQKIVEDS CGV  KPKKKLR
Subjt:  KKNKRQKIVEDSGCGVVKKPKKKLR

A0A1S3AY37 uncharacterized protein LOC1034838322.9e-4184.55Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN
        RLAHPGGPLKTNKAAALAKFL RKLHQDPNA SSINPQILDLAVRNAKASV S     SGTNI HVD+FDDPEASFDEGESMNSEP+KQK K KKKK KN
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK-KKKKKKN

Query:  KKNKRQKIVEDSGCGVVKKPKKK
        KKNKRQKIVEDS CGV K P  K
Subjt:  KKNKRQKIVEDSGCGVVKKPKKK

A0A6J1GVW4 uncharacterized protein LOC111457905 isoform X16.9e-4378.99Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLR
         KK KKN     KKNKRQ KIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN-----KKNKRQ-KIVEDSGCGVVKKPKKKLR

A0A6J1GY51 uncharacterized protein LOC111457905 isoform X22.8e-4479.56Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLR
         KK KKN     KKNKRQKIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN-----KKNKRQKIVEDSGCGVVKKPKKKLR

A0A6J1IUT6 uncharacterized protein LOC1114794941.7e-4480.74Show/hide
Query:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK
        P    S  RLAHPGGPLKTNKAAALAKFL RKLHQDPN LSSINPQIL+LAVRNAKASVLSS    SGTNI HVD+FDDPEASFD+GE+MNSEP+KQKNK
Subjt:  PNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNK

Query:  KKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLR
         KK KKN   KKNKRQKIVEDSGCGV K+PKKKL+
Subjt:  KKKKKKN---KKNKRQKIVEDSGCGVVKKPKKKLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G18540.1 unknown protein3.4e-2656.82Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNKK-------
        RLAHPGGPLKTNKAAALAKFL+RKL QDPN L+SI+P +++LAV+NAK +V+SSG S SG  I HV SF+D E S D+ +  N++  K+K KK       
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNKK-------

Query:  -KKKKKNKKNKRQKIVEDSGCGVVKKPKKKLR
         KKKKKNKK+K+Q  V++     +K+P KKL+
Subjt:  -KKKKKNKKNKRQKIVEDSGCGVVKKPKKKLR

AT5G18540.2 unknown protein3.4e-2658.91Show/hide
Query:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMN---SEPRKQKNKKKKK-
        RLAHPGGPLKTNKAAALAKFL+RKL QDPN L+SI+P +++LAV+NAK +V+SSG S SG  I HV SF+D E S D+ +  N   ++ +K+KN KKKK 
Subjt:  RLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMN---SEPRKQKNKKKKK-

Query:  -KKNKKNKRQKIVEDSGCGVVKKPKKKLR
         KK KKNK+ KI  D     +K+P KKL+
Subjt:  -KKNKKNKRQKIVEDSGCGVVKKPKKKLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AAATTCAATTTACTCGTTCGACACGTCGTTCAAGCTCCCGCCCCACGGGGACGACAAAACGACTTTCCCTCTCATTCCCGAAGCCGAAAGAAAAGAAAGGACAGACAAGC
TGCAGAAGGAAACTGTATTCAGATTTTAGAAAAACAAATAGAAAGAATCCATAGCCATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGCAGCAAATTCGCG
CCACTACCATCCCAATCCACTTCCTCTCGATCTCACCCAAGGTTTTGAAACTAATAATACTCTCTTCTTCTTCTTCTTCTTCTTCATCATCTCTTTCAGGTTTCTCTTCT
GTAAATCCTAATCAATGGGTTTCTATTCAAAGGTTGGCTCATCCAGGTGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCCAGAGGAAATTGCACCA
AGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCGCTGTTCGTAATGCCAAAGCTTCTGTTCTTTCCAGTGGCACGTCAGGTTCTGGCACAAATATTC
TCCATGTGGACTCATTTGATGATCCTGAGGCCTCTTTTGACGAAGGGGAATCCATGAATTCTGAGCCTAGAAAACAGAAGAACAAGAAGAAGAAGAAGAAGAAAAATAAG
AAGAATAAGAGGCAAAAGATTGTTGAGGACTCCGGGTGTGGCGTTGTGAAAAAACCCAAAAAGAAGTTGAGA
mRNA sequenceShow/hide mRNA sequence
AAATTCAATTTACTCGTTCGACACGTCGTTCAAGCTCCCGCCCCACGGGGACGACAAAACGACTTTCCCTCTCATTCCCGAAGCCGAAAGAAAAGAAAGGACAGACAAGC
TGCAGAAGGAAACTGTATTCAGATTTTAGAAAAACAAATAGAAAGAATCCATAGCCATGGAGGATCTTACCGAAGAAGAAAGACGTGCTTTACGGGGCAGCAAATTCGCG
CCACTACCATCCCAATCCACTTCCTCTCGATCTCACCCAAGGTTTTGAAACTAATAATACTCTCTTCTTCTTCTTCTTCTTCTTCATCATCTCTTTCAGGTTTCTCTTCT
GTAAATCCTAATCAATGGGTTTCTATTCAAAGGTTGGCTCATCCAGGTGGACCATTGAAGACCAACAAAGCGGCGGCTCTCGCCAAATTTCTCCAGAGGAAATTGCACCA
AGATCCTAATGCTTTGTCTTCTATCAATCCCCAGATTTTGGACCTCGCTGTTCGTAATGCCAAAGCTTCTGTTCTTTCCAGTGGCACGTCAGGTTCTGGCACAAATATTC
TCCATGTGGACTCATTTGATGATCCTGAGGCCTCTTTTGACGAAGGGGAATCCATGAATTCTGAGCCTAGAAAACAGAAGAACAAGAAGAAGAAGAAGAAGAAAAATAAG
AAGAATAAGAGGCAAAAGATTGTTGAGGACTCCGGGTGTGGCGTTGTGAAAAAACCCAAAAAGAAGTTGAGA
Protein sequenceShow/hide protein sequence
KFNLLVRHVVQAPAPRGRQNDFPSHSRSRKKRKDRQAAEGNCIQILEKQIERIHSHGGSYRRRKTCFTGQQIRATTIPIHFLSISPKVLKLIILSSSSSSSSSSLSGFSS
VNPNQWVSIQRLAHPGGPLKTNKAAALAKFLQRKLHQDPNALSSINPQILDLAVRNAKASVLSSGTSGSGTNILHVDSFDDPEASFDEGESMNSEPRKQKNKKKKKKKNK
KNKRQKIVEDSGCGVVKKPKKKLR