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Lsi05G015540 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G015540
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptiontRNA 2-thiocytidine biosynthesis protein TtcA
Genome locationchr05:23318204..23324754
RNA-Seq ExpressionLsi05G015540
SyntenyLsi05G015540
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GER52167.1 tRNA 2-thiocytidine biosynthesis protein TtcA [Striga asiatica]4.2e-1466.67Show/hide
Query:  GFMLLTVIIDAGYTPPSSAICGTFLIRPIAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLLSIAS
        G  +LTV+IDAGYT  SS+  GTF I PIA+I+TSG L +GEPNFPP+APILL+VIVPP IS  LSLL+ A+
Subjt:  GFMLLTVIIDAGYTPPSSAICGTFLIRPIAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLLSIAS
TrEMBL top hitse value%identityAlignment
A0A2P2JXB3 Uncharacterized protein4.6e-0675Show/hide
Query:  IAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLL
        +AMI TSGKL++G PNFPP+AP+LL+VIVPP IS GLSLL
Subjt:  IAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLL
A0A5A7R602 tRNA 2-thiocytidine biosynthesis protein TtcA2.1e-1466.67Show/hide
Query:  GFMLLTVIIDAGYTPPSSAICGTFLIRPIAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLLSIAS
        G  +LTV+IDAGYT  SS+  GTF I PIA+I+TSG L +GEPNFPP+APILL+VIVPP IS  LSLL+ A+
Subjt:  GFMLLTVIIDAGYTPPSSAICGTFLIRPIAMIDTSGKLSKGEPNFPPMAPILLKVIVPPDISPGLSLLSIAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATACTATACTTCAGAGTTCAGAGAGGGGAAATTCAAATCAATCGCAATAAGAAATATAGTAGAAACAGATCAAGACCCTCTACAGGGTTCAAGCAGGATTAA
AAAAAATCATCGAATCGACTCGACAAATTCACTTAAGATGCAGAAACATAGTAGCCCTACCCCCAACATAATCCATGGCGGAGGCTTCAGGAACATCACGAGCTTTCTGA
GAGATTACGACGGCGAGCTCAACCTCGTGATCCAAAGACTTCAGAGGGTGAGGAATCTCGATTGTCCCTCCATTTTGCAAAATGAAAAGGAATTTTGTTTAAGAAACCTT
GGGGACGGCGTTGCCAAGTTCTTTGGCATGGGCGGCGTAGTTCCGGCCGACGGCGATGATCTTGGTTCCGACATTCAGAAGATTTGCGTACGCCGTTGCCATTTTCCGGT
AGCGAATTCCAACAAGTTCGGCGATCTCGCAACGCCGGGGGTGGTCAACAATGGAAGCAGACTAAGACAGTGCAATAAACCATTGATTGGTTTTATGTTGCTTACCGTCA
TAATCGATGCGGGATACACGCCCCCATCATCGGCAATTTGTGGAACCTTTTTGATTCGGCCGATTGCGATGATAGATACTTCAGGCAAGTTGAGCAAAGGAGAACCGAAT
TTTCCACCAATGGCTCCAATATTGCTTAAGGTTATTGTGCCGCCGGATATATCCCCAGGATTAAGCTTGTTATCCATTGCCAGTTTTGCCAAATGCCCTTCAGTTAACCC
TGAAGCCTGGGTTTCATCCTCAAAACCCTCAACAAAATGTGATATTATGATAATTCACCACTATAGTGCTTCTGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATACTATACTTCAGAGTTCAGAGAGGGGAAATTCAAATCAATCGCAATAAGAAATATAGTAGAAACAGATCAAGACCCTCTACAGGGTTCAAGCAGGATTAA
AAAAAATCATCGAATCGACTCGACAAATTCACTTAAGATGCAGAAACATAGTAGCCCTACCCCCAACATAATCCATGGCGGAGGCTTCAGGAACATCACGAGCTTTCTGA
GAGATTACGACGGCGAGCTCAACCTCGTGATCCAAAGACTTCAGAGGGTGAGGAATCTCGATTGTCCCTCCATTTTGCAAAATGAAAAGGAATTTTGTTTAAGAAACCTT
GGGGACGGCGTTGCCAAGTTCTTTGGCATGGGCGGCGTAGTTCCGGCCGACGGCGATGATCTTGGTTCCGACATTCAGAAGATTTGCGTACGCCGTTGCCATTTTCCGGT
AGCGAATTCCAACAAGTTCGGCGATCTCGCAACGCCGGGGGTGGTCAACAATGGAAGCAGACTAAGACAGTGCAATAAACCATTGATTGGTTTTATGTTGCTTACCGTCA
TAATCGATGCGGGATACACGCCCCCATCATCGGCAATTTGTGGAACCTTTTTGATTCGGCCGATTGCGATGATAGATACTTCAGGCAAGTTGAGCAAAGGAGAACCGAAT
TTTCCACCAATGGCTCCAATATTGCTTAAGGTTATTGTGCCGCCGGATATATCCCCAGGATTAAGCTTGTTATCCATTGCCAGTTTTGCCAAATGCCCTTCAGTTAACCC
TGAAGCCTGGGTTTCATCCTCAAAACCCTCAACAAAATGTGATATTATGATAATTCACCACTATAGTGCTTCTGCATGA
Protein sequenceShow/hide protein sequence
MEEYYTSEFREGKFKSIAIRNIVETDQDPLQGSSRIKKNHRIDSTNSLKMQKHSSPTPNIIHGGGFRNITSFLRDYDGELNLVIQRLQRVRNLDCPSILQNEKEFCLRNL
GDGVAKFFGMGGVVPADGDDLGSDIQKICVRRCHFPVANSNKFGDLATPGVVNNGSRLRQCNKPLIGFMLLTVIIDAGYTPPSSAICGTFLIRPIAMIDTSGKLSKGEPN
FPPMAPILLKVIVPPDISPGLSLLSIASFAKCPSVNPEAWVSSSKPSTKCDIMIIHHYSASA