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Lsi05G015850 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G015850
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionDNA-directed RNA polymerase subunit
Genome locationchr05:23614441..23617266
RNA-Seq ExpressionLsi05G015850
SyntenyLsi05G015850
Gene Ontology termsGO:0001193 - maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter (biological process)
GO:0006283 - transcription-coupled nucleotide-excision repair (biological process)
GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006379 - mRNA cleavage (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005730 - nucleolus (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001222 - Zinc finger, TFIIS-type
IPR001529 - DNA-directed RNA polymerase, M/15kDa subunit
IPR012164 - DNA-directed RNA polymerase subunit/transcription factor S
IPR019761 - DNA-directed RNA polymerase M, 15kDa subunit, conserved site
IPR034012 - Pol II subunit B9, C-terminal zinc ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA8527386.1 hypothetical protein F0562_034899 [Nyssa sinensis]6.4e-6295.61Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_008438942.1 PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Cucumis melo]2.0e-6399.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024019992.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Morus notabilis]2.2e-6296.49Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRD+KILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQDVAADPTLPRTK+VRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_024963039.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cynara cardunculus var. scolymus]4.9e-6296.49Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+D+KILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQC HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

XP_030503042.1 DNA-directed RNA polymerases II, IV and V subunit 9A [Cannabis sativa]4.5e-6398.25Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHH+VGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

TrEMBL top hitse value%identityAlignment
A0A0A0L816 DNA-directed RNA polymerase subunit9.7e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A5A7U5C7 DNA-directed RNA polymerase subunit9.7e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1CBU6 DNA-directed RNA polymerase subunit9.7e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1FM50 DNA-directed RNA polymerase subunit9.7e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

A0A6J1I879 DNA-directed RNA polymerase subunit9.7e-6499.12Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVA+NNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWRD
Subjt:  FVCCNPNCGHRWRD

SwissProt top hitse value%identityAlignment
P36954 DNA-directed RNA polymerase II subunit RPB91.5e-3758.04Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ A+N+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

P60898 DNA-directed RNA polymerase II subunit RPB91.5e-3758.04Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ A+N+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q32P73 DNA-directed RNA polymerase II subunit RPB91.5e-3758.04Show/hide
Query:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV
        ++FC+ECNN+LYPKED++ +ILLYACRNCD+Q+ A+N+C+Y N+I H V E TQ++ DV+ DPTLPRT+   C +C H EAVFFQ+ +AR E+ M L++V
Subjt:  MKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQA-TARGEEGMTLFFV

Query:  CCNPNCGHRWRD
        C  P+CGHRW +
Subjt:  CCNPNCGHRWRD

Q6NLH0 DNA-directed RNA polymerases II, IV and V subunit 9A2.4e-5985.96Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVA+N+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

Q8L5V0 DNA-directed RNA polymerases II, IV and V subunit 9B4.1e-5985.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE A+NNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD

Arabidopsis top hitse value%identityAlignment
AT3G16980.1 RNA polymerases M/15 Kd subunit1.7e-6085.96Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++KILLYACRNCDHQEVA+N+CVYRNE+HH+V ERTQ+L DVA+DPTLPRTKAVRC++C H EAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNCGHRWR+
Subjt:  FVCCNPNCGHRWRD

AT4G16265.1 RNA polymerases M/15 Kd subunit2.9e-6085.09Show/hide
Query:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF
        MSTMKFCRECNNILYPKED+++ ILLYACRNCDHQE A+NNCVYRNE+HH+V E+TQ+L DVA+DPTLPRTKAVRCA+C HGEAVFFQATARGEEGMTLF
Subjt:  MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLF

Query:  FVCCNPNCGHRWRD
        FVCCNPNC HRWR+
Subjt:  FVCCNPNCGHRWRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTACCATGAAGTTCTGCCGGGAATGTAACAACATTCTCTATCCGAAAGAGGATAGAGATGAGAAGATTCTTCTCTATGCGTGTCGTAACTGTGATCACCAGGAAGT
TGCTGAAAATAACTGCGTCTATAGGAATGAGATTCATCACGCTGTAGGGGAACGCACTCAAGTTCTGCAAGATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTG
TCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTTTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATGACATTGTTCTTCGTCTGCTGCAATCCAAATTGTGGCCAC
AGATGGAGAGATTGA
mRNA sequenceShow/hide mRNA sequence
AGATAATAGTGTAATATGCAGTTACAATTAAGACCTTCTATGTATAAAACCCCTAAGACTACCCCTTAATTTACTGGGCTACCAAAATTTGATTTGGGTTCTGGAATTCG
AAGCCCATTTACAATTTCTTCAGTTTCTCCTGCCATTGGAAGAAAACTCCTCTTTCGCCTTATCGACGTTTCTAGAACCGCAGGGCTGATTTTTGATCGTCTTCTTTACA
CTCTACTCAAACTCTTCAAAATCTATCATTTTCTTTGATATACTCTTAGATTATCTCGCAGATTCCTTCTGATTCTCAGCTGCTAAAACCCTAGGGAGAAATTTATCTTT
GTTTAGCTCAGGGTTTGTTGTTTTTCTACCTTCTGCAAGATGAGTACCATGAAGTTCTGCCGGGAATGTAACAACATTCTCTATCCGAAAGAGGATAGAGATGAGAAGAT
TCTTCTCTATGCGTGTCGTAACTGTGATCACCAGGAAGTTGCTGAAAATAACTGCGTCTATAGGAATGAGATTCATCACGCTGTAGGGGAACGCACTCAAGTTCTGCAAG
ATGTTGCTGCAGATCCAACTCTCCCTCGCACTAAAGCTGTCCGATGTGCTCAATGCAACCATGGAGAAGCTGTTTTTTTCCAGGCCACTGCCAGAGGGGAGGAAGGTATG
ACATTGTTCTTCGTCTGCTGCAATCCAAATTGTGGCCACAGATGGAGAGATTGATATCAAATACATGCCGAATTTTTCCTTTGTGCAATCGAAGTTTTATTGGCACACCA
AATGTTTTAACCATCTTATGCTTGAAGACAATATGTTTTTAACATGGGATTTACAATTGTACTGATTGTCTGTGGGTTGATGAGAACCATTAACTTCGCAACTTCTCAAC
TTCTCAATTTAACTTTGCAGAGATGTGCTGGAAACAATGCTGTTTGGGAGTGTTTTAAAATTATTTGTCATTTTTTAAATTGTTTGTGTTTTTAATCATTCAAAATTAAT
TTTGACTAGATGAGAATTGCATTAAAAAAAAAAGTTAAATTAAAATCGATTTTGAGTTATTAAAGATGTATTTTGAAGTAGTTTCGAATATGATAAAAAGTAA
Protein sequenceShow/hide protein sequence
MSTMKFCRECNNILYPKEDRDEKILLYACRNCDHQEVAENNCVYRNEIHHAVGERTQVLQDVAADPTLPRTKAVRCAQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGH
RWRD