CuGenDBv2

Gene ID	Lsi05G015910
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Nucleic acid-binding proteins superfamily isoform 1
Genome location	chr05:23678100..23683531
RNA-Seq Expression	Lsi05G015910
Synteny	Lsi05G015910
Gene Ontology terms	NA
InterPro domains	IPR035201 - Cell division control protein 24, OB domain 1

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049545.1 Nucleic acid-binding proteins superfamily isoform 1 [Cucumis melo var. makuwa]

1.3e-39

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

TYK16222.1 Nucleic acid-binding proteins superfamily isoform 1 [Cucumis melo var. makuwa]

1.3e-39

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

XP_008438949.1 PREDICTED: uncharacterized protein LOC103483891 isoform X2 [Cucumis melo]

1.3e-39

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

XP_016898971.1 PREDICTED: uncharacterized protein LOC103483891 isoform X1 [Cucumis melo]

1.3e-39

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

XP_023538883.1 uncharacterized protein LOC111799677 [Cucurbita pepo subsp. pepo]

1.1e-38

91.3

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Query:  HFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        HFN D+AG NSAMEL+DRRRLQEE DDDPFLKF+DYARSVLAFEDEEDFDPNV GTET TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  HFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5D2 Uncharacterized protein

6.9e-39

87.23

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DA RNSAMELDD ++LQEEGDDDPFLKFVDYARSVLAFED+EDFDPN+NGTET+TPGW+WIASRVLRTC+AYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

A0A1S3AX73 uncharacterized protein LOC103483891 isoform X2

6.3e-40

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

A0A1S4DSK5 uncharacterized protein LOC103483891 isoform X1

6.3e-40

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

A0A5A7U7H0 Nucleic acid-binding proteins superfamily isoform 1

6.3e-40

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

A0A5D3CXI2 Nucleic acid-binding proteins superfamily isoform 1

6.3e-40

91.49

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Query:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        S HFN  DAGR SAMELDD R+LQEEGDDDPFLKFVDYARSVLAFED+EDFDPNVNGTET+TPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
Subjt:  SGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G17030.1 Nucleic acid-binding proteins superfamily

3.7e-16

48.42

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Query:  LDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEED------FDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ
        + D    S +E+ D     +E  +DPFL F+DYAR+V++ ED+ED        P    TE + PGW W+ASR+L+TC AYSS VT AILLS+LSQ
Subjt:  LDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEED------FDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQ

Sequences

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CDS sequence

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ATGGAAAGCGGACATTTCAACTTGGACGACGCCGGCCGAAACTCAGCCATGGAGTTAGATGATCGCCGAAGGCTTCAGGAAGAAGGTGATGATGATCCGTTTCTTAAATT
TGTCGATTACGCGAGGTCCGTGCTAGCATTCGAAGACGAAGAAGACTTCGATCCTAATGTTAATGGAACGGAGACAAATACCCCGGGTTGGAGTTGGATCGCCTCTCGGG
TCCTCAGAACTTGTATCGCCTACTCCAGTTCTGTTACCCCTGCGATTTTGCTATCCGAGCTCTCGCAGGTAATGCGGGCCAACCTCGGGTCATCTAGATTGCACCTCGAC
CCCATATTGGTCTTTTTAAGTACTAGTATCCTCTCAATGTTCCTTTGGGGTTCATTATCTCATCAGCTGAGAGGCTATTTCAATTCAACTGTCAATTATGAGATTGTTCA
TGTGAGAAATGATTGGTTGCCTCCCAAGCTTCATAATCTGGATTCGGAATAA

mRNA sequence

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Protein sequence

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MESGHFNLDDAGRNSAMELDDRRRLQEEGDDDPFLKFVDYARSVLAFEDEEDFDPNVNGTETNTPGWSWIASRVLRTCIAYSSSVTPAILLSELSQVMRANLGSSRLHLD
PILVFLSTSILSMFLWGSLSHQLRGYFNSTVNYEIVHVRNDWLPPKLHNLDSE

Lsi05G015910 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome