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Lsi05G015990 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G015990
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionUnknown protein
Genome locationchr05:23742883..23743597
RNA-Seq ExpressionLsi05G015990
SyntenyLsi05G015990
Gene Ontology termsGO:0001172 - transcription, RNA-templated (biological process)
GO:0003968 - RNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5219268.1 RNA-directed RNA polymerase [Salix suchowensis]4.4e-2489.23Show/hide
Query:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPKQ
        LLQMGWLQSL SPLKK+WFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP LP KQ
Subjt:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPKQ

KAG6597448.1 hypothetical protein SDJN03_10628, partial [Cucurbita argyrosperma subsp. sororia]8.9e-2598.21Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
        MGWLQSLFSPLKKLWFRLHSSP+KRRGIYILYEDVKSCPCEDVHVLWSILVESHTP
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP

KGN56989.1 hypothetical protein Csa_010650 [Cucumis sativus]1.7e-28100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

PHT38775.1 hypothetical protein CQW23_22348 [Capsicum baccatum]2.6e-2490.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

XP_034923845.1 uncharacterized protein LOC118055914 [Populus alba]9.8e-2490.62Show/hide
Query:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPK
        LLQMGWLQSL SPLKKLWFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP LP K
Subjt:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPK

TrEMBL top hitse value%identityAlignment
A0A0A0L7K5 Uncharacterized protein8.3e-29100Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
        MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ

A0A0V0GKY9 Putative ovule protein1.1e-2388.71Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH   LPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

A0A2G2W0L8 Uncharacterized protein1.2e-2490.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

A0A2G2ZVG2 Uncharacterized protein1.2e-2490.32Show/hide
Query:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ
        MGWLQSLFSPLKKLWFRLHS+PKKRRGIYILYEDVKSCPCEDV VLWSILVESH  PLPP++
Subjt:  MGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHT-PLPPKQ

A0A4U5NLU7 Uncharacterized protein4.7e-2490.62Show/hide
Query:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPK
        LLQMGWLQSL SPLKKLWFRLHS+PKKRRGIYILYEDVKSC  EDVHVLWSILVESHTP LP K
Subjt:  LLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTP-LPPK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACATTTTCCCTCCATTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGTCTCCATTCTTCGCCCAAAAAACGAAG
AGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCCTGTGAAGATGTTCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAACATTTTCCCTCCATTTCTCTTCTCCAAATGGGGTGGCTCCAATCCCTCTTCTCCCCATTGAAGAAGCTCTGGTTTCGTCTCCATTCTTCGCCCAAAAAACGAAG
AGGGATATATATTCTGTATGAGGATGTGAAATCTTGTCCCTGTGAAGATGTTCATGTGCTTTGGTCAATATTAGTGGAATCACACACTCCATTGCCACCAAAACAATGAA
GCTTTCAACTTCCTAAACACACAGTTTCTCCACCAATGTACATAAAATATTTATAATGCTTTTATATACTGAAGGGAAAAAGAAAAAAAAAAGGAATGCCCGGAAATAAA
AGTTTTCCTTCTCCATTTTCATCTTTTTTTTTTTTCTCTCTCTCTTCTTCTAAATTTTTGTGTAGCTTCTTACAGTTGCTTTGTCCATTTCAGCAGTTGAATTCTACATC
TTATATTTTCAAGGTTGATTCTGATAATGACATGAGACAACTATTGAAT
Protein sequenceShow/hide protein sequence
MKHFPSISLLQMGWLQSLFSPLKKLWFRLHSSPKKRRGIYILYEDVKSCPCEDVHVLWSILVESHTPLPPKQ