; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G016020 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016020
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionFerredoxin
Genome locationchr05:23755584..23756027
RNA-Seq ExpressionLsi05G016020
SyntenyLsi05G016020
Gene Ontology termsGO:0022900 - electron transport chain (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0009055 - electron transfer activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR001041 - 2Fe-2S ferredoxin-type iron-sulfur binding domain
IPR010241 - Ferredoxin [2Fe-2S], plant
IPR012675 - Beta-grasp domain superfamily
IPR036010 - 2Fe-2S ferredoxin-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582296.1 Ferredoxin C 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]6.3e-7091.84Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQI CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_004134137.1 ferredoxin C 1, chloroplastic [Cucumis sativus]4.1e-6993.2Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI+CSRRRLVVRSYKVVIEHEG+ TELEVD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVV QGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_022956084.1 uncharacterized protein LOC111457884 [Cucurbita moschata]1.3e-7091.84Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+ CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_022979429.1 uncharacterized protein LOC111479154 [Cucurbita maxima]4.9e-7091.84Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQI CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL+SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

XP_023526556.1 uncharacterized protein LOC111790026 [Cucurbita pepo subsp. pepo]7.5e-7192.52Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQI CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

TrEMBL top hitse value%identityAlignment
A0A0A0L4U6 Ferredoxin2.0e-6993.2Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQP KLSSV   RPTTQI+CSRRRLVVRSYKVVIEHEG+ TELEVD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVV QGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A1S3AX36 Ferredoxin3.4e-6992.52Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQP KLSSV   +PTT I+CSRRRLVVRSYKVVIEHEG+ TELEVD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A5D3D1U0 Ferredoxin3.4e-6992.52Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQP KLSSV   +PTT I+CSRRRLVVRSYKVVIEHEG+ TELEVD DESILSSALDNG+EIPHDCKLGVCMTCPARLVSGTVD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A6J1GY17 Ferredoxin6.2e-7191.84Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQ+ CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

A0A6J1IWL8 Ferredoxin2.4e-7091.84Show/hide
Query:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD
        MATLHFVPSAFSLPKQKQPTKLSSVFKLR TTQI CS+RRLVVRSYKVVIEHEG+ TELEVDADESIL+SALD G++IPHDCKLGVCMTCPARLVSG VD
Subjt:  MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVD

Query:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        QSEGMLSDDVVE+GYSLLCVAYPRSDCHI+TIPEEELLALQLATAND
Subjt:  QSEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

SwissProt top hitse value%identityAlignment
O23344 Ferredoxin C 1, chloroplastic1.9e-4563.01Show/hide
Query:  SAFSLPKQKQPTKLSSVFKLRPTTQIACSRR-------RLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQ
        S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+GK TELEV+ DE+ILS ALD+G+++P+DC LGVCMTCPA+LV+GTVDQ
Subjt:  SAFSLPKQKQPTKLSSVFKLRPTTQIACSRR-------RLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQ

Query:  SEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        S GMLSDDVVE+GY+LLC +YP SDCHIK IPEEELL+LQLATAND
Subjt:  SEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

P00248 Ferredoxin1.1e-1951.04Show/hide
Query:  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL
        +YKV +  E EG    +EV  D+ IL +A + GI++P+ C+ G C TC  +L+SGTVDQS +  L DD +E GY L CVAYP SDC I+T  EEEL
Subjt:  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL

P00252 Ferredoxin-11.4e-1950Show/hide
Query:  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL
        YKV +++ EG  T ++V  DE IL  A D G+++P+ C+ G C TC  ++VSGTVDQS +  L DD +E+GY L CVAYP SD  I+T  EE+L
Subjt:  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL

P08451 Ferredoxin-28.2e-2046.94Show/hide
Query:  SYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGM-LSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQ
        +Y+V + ++G++     D+D+S+L SA   G+++P  C  GVC TC AR++SG VDQ + M +  +  +QGY+LLCVAYPRSD  I+T  E+EL ALQ
Subjt:  SYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGM-LSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQ

Q51577 Ferredoxin-15.3e-1948.96Show/hide
Query:  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL
        S+KV +  E EG  T +EV  DE IL +A + GI++P+ C+ G C TC  ++ +GTVDQS +  L DD ++ GY L CVAYP SDC I T  EE+L
Subjt:  SYKVVI--EHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL

Arabidopsis top hitse value%identityAlignment
AT1G10960.1 ferredoxin 12.8e-1535.21Show/hide
Query:  VPSAFSLPKQKQPTKL--------SSVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSG
        + S   L +Q+ P  L         S+F L+ +T  A   R   + +YKV  I  EG+  E+E + D  +L +A + G+++P+ C+ G C +C  ++VSG
Subjt:  VPSAFSLPKQKQPTKL--------SSVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSG

Query:  TVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELL
        ++DQS +  L D+ + +GY L CVAYP SD  I+T  EE ++
Subjt:  TVDQS-EGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELL

AT1G60950.1 2Fe-2S ferredoxin-like superfamily protein3.6e-1539.32Show/hide
Query:  SVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVA
        S+F L+  T  A   R   + +YKV  I  EG+  E+E D D  +L +A + GI++P+ C+ G C +C  ++VSG+VDQS +  L D+ + +G+ L C A
Subjt:  SVFKLRPTTQIACSRRRLVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQS-EGMLSDDVVEQGYSLLCVA

Query:  YPRSDCHIKTIPEEELL
        YP SD  I+T  EE+++
Subjt:  YPRSDCHIKTIPEEELL

AT2G27510.1 ferredoxin 35.4e-1947.87Show/hide
Query:  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL
        YKV ++  +G+  E EV  D+ IL +A + G+++P+ C+ G C TC  ++VSG VDQS+G  L D  +E+GY L CVAYP+SDC I T  E EL
Subjt:  YKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEEL

AT4G14890.1 2Fe-2S ferredoxin-like superfamily protein1.4e-4663.01Show/hide
Query:  SAFSLPKQKQPTKLSSVFKLRPTTQIACSRR-------RLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQ
        S  SLPK       S  F LR  T    + R       R++ R+YKVV+EH+GK TELEV+ DE+ILS ALD+G+++P+DC LGVCMTCPA+LV+GTVDQ
Subjt:  SAFSLPKQKQPTKLSSVFKLRPTTQIACSRR-------RLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQ

Query:  SEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND
        S GMLSDDVVE+GY+LLC +YP SDCHIK IPEEELL+LQLATAND
Subjt:  SEGMLSDDVVEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND

AT5G10000.1 ferredoxin 43.6e-1536.72Show/hide
Query:  PTKLSSVFKLRPTTQIACSRRR------LVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDV
        P++     +L  TT    S  R          S KV +I  EG+  E+E + D  IL SA + G+E+P+ C+ G C TC  +LVSG VDQS G  L ++ 
Subjt:  PTKLSSVFKLRPTTQIACSRRR------LVVRSYKV-VIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEG-MLSDDV

Query:  VEQGYSLLCVAYPRSDCHIKTIPEEELL
        +++GY L C+A P  DC + T  + +L+
Subjt:  VEQGYSLLCVAYPRSDCHIKTIPEEELL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTC
ACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACA
ATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTT
GTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGA
CTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACTCTTCATTTTGTTCCATCTGCTTTCTCTCTACCCAAACAAAAGCAACCCACCAAGCTTTCCTCAGTCTTCAAGCTCAGACCCACAACCCAGATAGCCTGCTC
ACGGCGGCGCTTGGTGGTCCGGTCGTACAAAGTGGTGATCGAGCACGAGGGGAAGGCCACCGAGCTTGAGGTCGATGCCGACGAGAGCATATTGAGCAGTGCATTGGACA
ATGGCATAGAAATTCCTCACGATTGCAAGCTTGGAGTGTGCATGACTTGCCCTGCTCGCCTTGTCAGTGGCACCGTCGACCAAAGCGAAGGCATGCTGAGCGATGACGTT
GTGGAGCAAGGCTATTCGCTTCTGTGTGTGGCTTATCCCCGCTCAGACTGCCACATAAAAACCATCCCTGAGGAAGAATTGTTGGCACTTCAATTAGCCACGGCTAATGA
CTAA
Protein sequenceShow/hide protein sequence
MATLHFVPSAFSLPKQKQPTKLSSVFKLRPTTQIACSRRRLVVRSYKVVIEHEGKATELEVDADESILSSALDNGIEIPHDCKLGVCMTCPARLVSGTVDQSEGMLSDDV
VEQGYSLLCVAYPRSDCHIKTIPEEELLALQLATAND