CuGenDBv2

Gene ID	Lsi05G016300
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	40S ribosomal protein S3a
Genome location	chr05:23947144..23949059
RNA-Seq Expression	Lsi05G016300
Synteny	Lsi05G016300
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001593 - Ribosomal protein S3Ae IPR018281 - Ribosomal protein S3Ae, conserved site IPR027500 - 40S ribosomal protein S1/3, eukaryotes

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004134125.1 40S ribosomal protein S3a [Cucumis sativus]

5.9e-131

85.05

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQ+DEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADE AVEGATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

XP_008438626.1 PREDICTED: 40S ribosomal protein S3a [Cucumis melo]

2.0e-131

85.38

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQ+DEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAAVEGATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

XP_022979234.1 40S ribosomal protein S3a-like [Cucurbita maxima]

2.2e-130

84.72

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFE+SLADLQDDEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAA E ATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

XP_023527182.1 40S ribosomal protein S3a-like [Cucurbita pepo subsp. pepo]

5.0e-130

84.39

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFE+SLADLQDDEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAA E ATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

XP_038875051.1 40S ribosomal protein S3a [Benincasa hispida]

1.2e-131

85.05

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQDDEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIM+NQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAAVEGATE+VG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4P6 40S ribosomal protein S3a

2.9e-131

85.05

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQ+DEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADE AVEGATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

A0A1S3AXI4 40S ribosomal protein S3a

9.9e-132

85.38

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQ+DEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAAVEGATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

A0A5D3CZ21 40S ribosomal protein S3a

2.9e-131

85.05

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFEISLADLQ+DEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADE AVEGATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

A0A6J1IG66 40S ribosomal protein S3a

3.2e-130

84.05

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFE+SLADLQDDEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAA EG TE+VG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

A0A6J1IW45 40S ribosomal protein S3a

1.1e-130

84.72

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQ                IASEGLKHRVFE+SLADLQDDEEHAYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDYSEDVGVKVERPADEAA E ATEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

SwissProt top hits

e value

%identity

Alignment

A5B4K1 40S ribosomal protein S3a-1

4.9e-120

76.41

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPSVF V+NVGKTLV+RTQ                IASEGLKHRVFEISLADLQ DE+ AYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLTNFWGM+FTTDKLRSLVRKW TLIEAHVDVKTTDNYTLR+FCI FTK+R NQ K+TCYAQSSQIRQIRRKMREIM N A+SCDLKELV+K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIG+EIEKATSSIYPLQNV+IRKVKILKAPKFDLGKLME                           VHGDYSEDVG K+ERPADE   EG TEV+G
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

P33444 40S ribosomal protein S3a

3.0e-117

74.83

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKA DPFAKKDWYDIKAPSVF+V+NVGKTLVTRTQ                IASEGL+HRVFEISLADLQ DE+H++RKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AED+QG+NVLTNFWGM+FTTDKLRSLVRKW +LIEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIRQIRRKMREIMVNQA SCDLK+LV+K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSE-DVGVKVERPADEAAVEGATEVV
        FIPESIG+EIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDY+E D+G K++RPA+EA  E  TEV+
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSE-DVGVKVERPADEAAVEGATEVV

Query:  GA
        GA
Subjt:  GA

P49198 40S ribosomal protein S3a

1.6e-118

75.08

Show/hide

Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKA DPF+KKDWYDIKAPS+F  +NVGKTLVTRTQ                IASEGLKHRVFE+SLADLQ+DE+H+YRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQG+NVLTNFWGM+ TTDKLRSLV+KW +LIEAHVDVKTTDN+TLRMFCIGFTK+R NQVKRTCYAQSSQI+QIRRKMREIMV QA +CDLKELV+K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIG+EIEKATSSIYPLQNVFIRKVKILKAPKFD+GKLME                           VHGDYSEDVGVK++RPA+EAA E ATEV+G
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

Q8GTE3 40S ribosomal protein S3a

8.9e-122

78.07

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKA DPF+KKDWYDIKAPSVF VKNVGKTLV+RTQ                IASEGLKHRVFEISLADLQ DE++A+RKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQG+NVLTNF+GM+FTTDKLRSLVRKW TLIEAHVDVKTTDNYTLRMFCIGFTKRR NQVKRTCYAQSSQIRQIRRKMREIMVNQA+SCDLKELVRK
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPE IGKEIEKATSSIYPLQNVFIRKVKILK+PKFDLGKLME                           VHGDYSEDVG KVE PADE  VEG  E+VG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

Q9MBB3 40S ribosomal protein S3a

1.0e-117

76.08

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAP+VF  KNVGKTLV+RTQ                IASEGLKHRVFE+ LADLQ DE+ AYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQG+NVLTNF+GM+FTTDKLRSLVRKW TLIEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIRQIRRKM EIM NQASSCDLKELV K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG
        FIPESIG+EIEKATSSI+PLQNVFIRKVKILKAPKFD+GKLME                           VHGDYSEDVGVK+ERP +E  VEG TEVVG
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVG

Query:  A
        A
Subjt:  A

Arabidopsis top hits

e value

%identity

Alignment

AT3G04840.1 Ribosomal protein S3Ae

2.0e-116

73.18

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAPS+FT +NVGKTLV+RTQ                IASEGLKHRVFE+SLADLQ DE++AYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVL  FWGM+FTTDKLRSLV+KW TLIEAHVDVKTTD+YTLR+FCI FTKRR NQVKRTCYAQSSQIRQIRRKMR+IMV +ASSCDLK+LV K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYS-EDVGVKVERPADEAAVEGATEVV
        FIPE+IG+EIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLM+                           VHGDYS EDVGVKV+RPADE AVE  TE++
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYS-EDVGVKVERPADEAAVEGATEVV

Query:  GA
        GA
Subjt:  GA

AT4G34670.1 Ribosomal protein S3Ae

4.4e-116

73.51

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Query:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR
        MAVGKNKRISKG+KGGKKKA DPF+KKDWYD+KAP  FT +NVGKTLV+RTQ                IASEGLKHRVFE+SLADLQ+DE++AYRKIRLR
Subjt:  MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLR

Query:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK
        AEDVQGRNVLT FWGM+FTTDKLRSLV+KW TLIEAHVDVKTTD YTLRMFCI FTKRR NQVKRTCYAQSSQIRQIRRKM EIMV +ASSCDLKELV K
Subjt:  AEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRK

Query:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDY-SEDVGVKVERPADEAAVEGATEVV
        FIPE+IG+EIEKAT  IYPLQNVFIRKVKILKAPKFDLGKLME                           VHGDY +EDVGVKV+RPADE  VE  TE++
Subjt:  FIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDY-SEDVGVKVERPADEAAVEGATEVV

Query:  GA
        GA
Subjt:  GA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGTCGGCAAGAACAAGCGGATTTCGAAGGGAAAGAAGGGTGGCAAGAAGAAAGCCACTGATCCATTTGCCAAGAAGGATTGGTATGATATCAAGGCTCCTTCAGT
TTTCACTGTTAAGAATGTCGGAAAGACTCTTGTTACGCGCACCCAGGATGACTTGAAATACACTGCAAGTTTTCATAAGTCATATGATGCAGTGATTGCATCTGAAGGAC
TCAAACATAGAGTCTTCGAGATCTCTTTGGCTGATCTTCAGGACGATGAAGAGCATGCCTACAGAAAGATTCGATTGAGAGCAGAAGATGTTCAAGGGAGGAATGTACTG
ACAAATTTCTGGGGAATGAACTTCACTACTGACAAATTGAGGTCTTTAGTACGCAAGTGGCATACTTTGATTGAAGCTCACGTAGATGTCAAAACCACAGACAACTACAC
CCTTAGAATGTTTTGCATTGGCTTCACTAAGAGAAGGCCAAACCAGGTGAAAAGGACCTGTTATGCTCAATCGAGCCAGATCAGGCAGATCCGCCGCAAGATGAGAGAGA
TCATGGTAAACCAAGCGTCCTCCTGTGATTTGAAGGAATTGGTTCGCAAGTTCATTCCAGAGTCAATTGGCAAGGAGATTGAAAAGGCAACATCCAGTATCTACCCACTT
CAAAATGTGTTTATCCGGAAAGTTAAAATTTTGAAAGCTCCCAAATTCGATCTTGGGAAGTTAATGGAGGTATCTATCTGGTTTATTTCTCATTTGCTCTTTAAGAGTTT
AAACTTATCCAGTACCAACGGTCCAACAGAATTTTTCAAAGTTCACGGAGACTACTCAGAAGATGTTGGCGTGAAGGTTGAGAGACCTGCTGACGAAGCTGCAGTAGAAG
GGGCTACTGAAGTTGTTGGAGCTTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

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MAVGKNKRISKGKKGGKKKATDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQDDLKYTASFHKSYDAVIASEGLKHRVFEISLADLQDDEEHAYRKIRLRAEDVQGRNVL
TNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQASSCDLKELVRKFIPESIGKEIEKATSSIYPL
QNVFIRKVKILKAPKFDLGKLMEVSIWFISHLLFKSLNLSSTNGPTEFFKVHGDYSEDVGVKVERPADEAAVEGATEVVGA

Lsi05G016300 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome