CuGenDBv2

Gene ID	Lsi05G016560
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	photosynthetic NDH subunit of subcomplex B 5, chloroplastic
Genome location	chr05:24226403..24226960
RNA-Seq Expression	Lsi05G016560
Synteny	Lsi05G016560
Gene Ontology terms	GO:0006979 - response to oxidative stress (biological process) GO:0009507 - chloroplast (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR034569 - Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049312.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa]

2.6e-39

84.11

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

XP_004134105.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus]

4.0e-40

84.26

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Query:  MAPCSSLPVLSFNPIPKVIFKSSE-IRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHT
        MA CSSLPVLSFNPIPK+IFKSSE I AT FS ++   +NGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHT
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSE-IRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHT

Query:  YFEGEKKG
        YFEGEKKG
Subjt:  YFEGEKKG

XP_008438595.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo]

3.4e-39

84.11

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

XP_016898931.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucumis melo]

1.3e-38

83.96

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKK
        FEGEKK
Subjt:  FEGEKK

XP_038878594.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Benincasa hispida]

2.9e-46

91.59

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MAPCSSLPVLSFNPIPK+IFKSSEI AT FSNQ  PVSNGISASKLLG LT+RSLS RLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L8H7 Uncharacterized protein

1.9e-40

84.26

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Query:  MAPCSSLPVLSFNPIPKVIFKSSE-IRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHT
        MA CSSLPVLSFNPIPK+IFKSSE I AT FS ++   +NGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHT
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSE-IRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHT

Query:  YFEGEKKG
        YFEGEKKG
Subjt:  YFEGEKKG

A0A1S3AXF4 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2

1.6e-39

84.11

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

A0A1S4DSG6 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1

6.2e-39

83.96

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKK
        FEGEKK
Subjt:  FEGEKK

A0A5A7U0K2 Photosynthetic NDH subunit of subcomplex B 5

1.3e-39

84.11

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA  SSLPVLSFNPIPK+IF SSEI A  FS Q    SNGIS+SKLLGKLT+RSLS RLNAAGLSEIE DLNEDPVDRWETNSVSPEDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

A0A6J1GAI7 photosynthetic NDH subunit of subcomplex B 5, chloroplastic

1.8e-38

80.37

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Query:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY
        MA CSSLPVLSFNP+PK+IFKSS IRAT FSN+  P  NGISA+KLLGK  + S   RLNAAGLSEIE DLNEDPVDRWETNSVS EDFEYG YDGHHTY
Subjt:  MAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTY

Query:  FEGEKKG
        FEGEKKG
Subjt:  FEGEKKG

SwissProt top hits

e value

%identity

Alignment

Q9FG89 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic

2.4e-11

43.56

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Query:  SSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKR-SLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTYFEG
        +++ +LS   IPKV       R          VS+ I      GK  +R  L+  ++AAGLS+IE D+NEDP+ ++ETNS+  EDF+YG YDG HTY+EG
Subjt:  SSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKR-SLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTYFEG

Query:  E
        E
Subjt:  E

Arabidopsis top hits

e value

%identity

Alignment

AT5G43750.1 NAD(P)H dehydrogenase 18

1.7e-12

43.56

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Query:  SSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKR-SLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTYFEG
        +++ +LS   IPKV       R          VS+ I      GK  +R  L+  ++AAGLS+IE D+NEDP+ ++ETNS+  EDF+YG YDG HTY+EG
Subjt:  SSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKR-SLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTYFEG

Query:  E
        E
Subjt:  E

Sequences

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CDS sequence

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ATGATAAACCCGAAAATGGCTCCCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAGTTATCTTCAAGTCTTCTGAAATTAGAGCTACAGGGTTCTCGAA
TCAAAGATTTCCGGTAAGCAACGGAATCTCCGCCTCCAAGTTGCTCGGGAAATTGACGAAGAGAAGCCTCTCGTGGCGGCTGAATGCGGCAGGATTGTCCGAGATTGAAC
TCGACTTAAACGAAGATCCTGTAGATCGTTGGGAAACCAACAGTGTCAGCCCTGAAGATTTTGAGTATGGAGAATACGATGGACATCACACTTACTTTGAAGGCGAGAAG
AAAGGTTAG

mRNA sequence

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CAAAAGGCGGGGATTTAACGTTCAGAAATTAAAGATGATAAACCCGAAAATGGCTCCCTGTTCTTCCCTCCCCGTTCTTTCTTTCAATCCAATCCCCAAAGTTATCTTCA
AGTCTTCTGAAATTAGAGCTACAGGGTTCTCGAATCAAAGATTTCCGGTAAGCAACGGAATCTCCGCCTCCAAGTTGCTCGGGAAATTGACGAAGAGAAGCCTCTCGTGG
CGGCTGAATGCGGCAGGATTGTCCGAGATTGAACTCGACTTAAACGAAGATCCTGTAGATCGTTGGGAAACCAACAGTGTCAGCCCTGAAGATTTTGAGTATGGAGAATA
CGATGGACATCACACTTACTTTGAAGGCGAGAAGAAAGGTTAG

Protein sequence

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MINPKMAPCSSLPVLSFNPIPKVIFKSSEIRATGFSNQRFPVSNGISASKLLGKLTKRSLSWRLNAAGLSEIELDLNEDPVDRWETNSVSPEDFEYGEYDGHHTYFEGEK
KG

Lsi05G016560 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome