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Lsi05G016570 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016570
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionphotosynthetic NDH subunit of subcomplex B 5, chloroplastic
Genome locationchr05:24227287..24228781
RNA-Seq ExpressionLsi05G016570
SyntenyLsi05G016570
Gene Ontology termsGO:0006979 - response to oxidative stress (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR034569 - Photosynthetic NDH subunit of subcomplex B 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049312.1 photosynthetic NDH subunit of subcomplex B 5 [Cucumis melo var. makuwa]3.5e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

XP_004134105.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Cucumis sativus]3.5e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

XP_008438595.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X2 [Cucumis melo]3.5e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

XP_016898931.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucumis melo]2.1e-4676.74Show/hide
Query:  EHSGEPLQMILLQLDPQQAFKV-----NYCRSLKTQSSDFN----------TLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISD
        EHSGEPLQMILLQLDPQQAF+      +Y + L   +S F            +GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISD
Subjt:  EHSGEPLQMILLQLDPQQAFKV-----NYCRSLKTQSSDFN----------TLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISD

Query:  YNTMDIWEFNEKYGDLWDFTVKNDDITKT
        YNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  YNTMDIWEFNEKYGDLWDFTVKNDDITKT

XP_022974431.1 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X1 [Cucurbita maxima]1.0e-3794.94Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
        FN  GEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK

TrEMBL top hitse value%identityAlignment
A0A0A0L8H7 Uncharacterized protein1.7e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

A0A1S3AXF4 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X21.7e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

A0A1S4DSG6 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X11.0e-4676.74Show/hide
Query:  EHSGEPLQMILLQLDPQQAFKV-----NYCRSLKTQSSDFN----------TLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISD
        EHSGEPLQMILLQLDPQQAF+      +Y + L   +S F            +GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISD
Subjt:  EHSGEPLQMILLQLDPQQAFKV-----NYCRSLKTQSSDFN----------TLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISD

Query:  YNTMDIWEFNEKYGDLWDFTVKNDDITKT
        YNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  YNTMDIWEFNEKYGDLWDFTVKNDDITKT

A0A5A7U0K2 Photosynthetic NDH subunit of subcomplex B 51.7e-3896.25Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
        FN  GEYLYIGAAIFTIVFCIIE+DKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITKT

A0A6J1IBC3 photosynthetic NDH subunit of subcomplex B 5, chloroplastic isoform X15.0e-3894.94Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
        FN  GEY+YIGAA+FTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDITK

SwissProt top hitse value%identityAlignment
Q9FG89 Photosynthetic NDH subunit of subcomplex B 5, chloroplastic5.5e-3479.22Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI
        F+  GEYL+IGAA+FT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI

Arabidopsis top hitse value%identityAlignment
AT5G43750.1 NAD(P)H dehydrogenase 183.9e-3579.22Show/hide
Query:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI
        F+  GEYL+IGAA+FT+VFCIIEMDKPDQPHNFEPQIY +ERGARDKLI+DYNTM IW+FN+KYGD+WDFT++ DDI
Subjt:  FNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDYNTMDIWEFNEKYGDLWDFTVKNDDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTAGACTTCACATTTCTCACTACCATGTGCCATCACAGTTGAGCCAAGTATCAGTGATTCGGAATGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCA
GTTGGACCCCCAACAGGCTTTCAAGGTAAACTATTGCCGTTCTTTGAAAACTCAATCCTCTGACTTCAACACTCTAGGGGAGTATCTATACATTGGAGCAGCTATATTTA
CAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAGCCACACAACTTTGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTAC
AACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACTAAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTAGACTTCACATTTCTCACTACCATGTGCCATCACAGTTGAGCCAAGTATCAGTGATTCGGAATGAACATTCTGGGGAGCCATTGCAGATGATATTGCTGCA
GTTGGACCCCCAACAGGCTTTCAAGGTAAACTATTGCCGTTCTTTGAAAACTCAATCCTCTGACTTCAACACTCTAGGGGAGTATCTATACATTGGAGCAGCTATATTTA
CAATAGTATTTTGCATAATTGAAATGGACAAGCCAGACCAGCCACACAACTTTGAACCTCAGATATATAACATGGAGAGAGGGGCTCGTGACAAGTTGATATCAGACTAC
AACACCATGGACATCTGGGAATTCAATGAGAAGTATGGAGACTTGTGGGATTTCACTGTCAAGAACGATGATATAACTAAGACATGATTGGCTCCTCACTCCTCAGTGGA
TGTAAATTTTAAGGTAATTAAGAATTCATTATAAAATTTTTTATGAAAATGTATATCATACAATACAACACTATTTTTAGTCTTCTTCTTATAGTATTAGTGGATGTAAA
TTGTAATTATGAACTGAATGTCCTTATCAACCATATAGCAGGAATTTTTCTCTTGTATTTCTTTTAATCTTCTTGCAGTAAACATGGTTTATCCACTCATCACATGTTTA
CATTTGAAGTATGATAAGAATCAAGAGAGTCGAATTATATTGAAATGTAAAGGACTAACATGATAGCCAAGTAATTCGAGGTACTTGCACCCTCCCTCACGAAATCTCTT
TCGAAA
Protein sequenceShow/hide protein sequence
MESRLHISHYHVPSQLSQVSVIRNEHSGEPLQMILLQLDPQQAFKVNYCRSLKTQSSDFNTLGEYLYIGAAIFTIVFCIIEMDKPDQPHNFEPQIYNMERGARDKLISDY
NTMDIWEFNEKYGDLWDFTVKNDDITKT