; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G016640 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016640
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAuxin-responsive protein
Genome locationchr05:24301953..24303442
RNA-Seq ExpressionLsi05G016640
SyntenyLsi05G016640
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005515 - protein binding (molecular function)
GO:0008061 - chitin binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000270 - PB1 domain
IPR003311 - AUX/IAA protein
IPR033389 - AUX/IAA domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
APR63864.1 aux/IAA protein 7 [Populus tomentosa]5.1e-3195.65Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI
        MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEA+GLG+
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI

GFZ14150.1 indole-3-acetic acid inducible 14 [Actinidia rufa]1.8e-3193.06Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKS
        MG+YG QGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG+ KS
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKS

KAF9674045.1 hypothetical protein SADUNF_Sadunf10G0087100 [Salix dunnii]5.1e-3198.53Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG
        MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG

KAG6757399.1 hypothetical protein POTOM_037709 [Populus tomentosa]3.9e-3181.11Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPK---SNGKMQKQKLKRRLLG
        MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEA+GL I      NG+ + +KL  RL G
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPK---SNGKMQKQKLKRRLLG

KAG8499741.1 hypothetical protein CXB51_006315 [Gossypium anomalum]1.9e-3386.42Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKL
        MG YG +GMIDFMNESKLMDLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEAIGLG  KSNG+MQ+Q L
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKL

TrEMBL top hitse value%identityAlignment
A0A1L6K4W3 Auxin-responsive protein2.5e-3195.65Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI
        MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEA+GLG+
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI

A0A445F882 Auxin-induced protein5.5e-3195.65Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI
        MG+YGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEAIGLG+
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI

A0A5N5MN61 Auxin-responsive protein4.2e-3182.93Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLK
        +G  G+QG  DFMNESKL+DLLNSSEYV +YEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG PKS G++Q+QKLK
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLK

A0A7J0GTJ2 Auxin-responsive protein8.5e-3293.06Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKS
        MG+YG QGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG+ KS
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKS

W9QE85 Auxin-responsive protein3.2e-3195.65Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI
        MG+YGAQGMIDFMNESKLMDLLNSSEYVP+YEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLG+
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI

SwissProt top hitse value%identityAlignment
O24407 Auxin-responsive protein IAA161.7e-2986.57Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL
        +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGL
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL

P13089 Auxin-induced protein AUX284.2e-2874.68Show/hide
Query:  GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI-PKSNGKMQKQ
        G+  +QGM DFMNESKL DLLNSS+YVP+YEDKDGDWMLVGDVPWEMFV+SCKRLRIMKG EAIGLG+ P++  K + +
Subjt:  GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGI-PKSNGKMQKQ

P93830 Auxin-responsive protein IAA171.8e-2680.88Show/hide
Query:  MGDYGA-QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL
        MG +G  +GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGL
Subjt:  MGDYGA-QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL

Q38825 Auxin-responsive protein IAA74.8e-3282.5Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQK
        MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEA+GL  P++  K  K +
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQK

Q38832 Auxin-responsive protein IAA141.4e-3182.28Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQ
        MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGL  P++  K + +
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQ

Arabidopsis top hitse value%identityAlignment
AT1G04250.1 AUX/IAA transcriptional regulator family protein1.3e-2780.88Show/hide
Query:  MGDYGA-QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL
        MG +G  +GMIDFMNE KLMDL+NS +YVPSYEDKDGDWMLVGDVPW MFVD+CKRLR+MKGS+AIGL
Subjt:  MGDYGA-QGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL

AT3G04730.1 indoleacetic acid-induced protein 161.2e-3086.57Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL
        +G+YG QGM DFMNESKL+DLLN S+YVP+YEDKDGDWMLVGDVPWEMFVDSCKR+RIMKGSEAIGL
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGL

AT3G23050.1 indole-3-acetic acid 73.4e-3382.5Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQK
        MG+YGAQGMIDFMNESKLM+LLNSSEYVPSYEDKDGDWMLVGDVPWEMFV+SCKRLRIMKGSEA+GL  P++  K  K +
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQK

AT4G14550.1 indole-3-acetic acid inducible 149.9e-3382.28Show/hide
Query:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQ
        MG YGAQGMIDFMNESK+MDLLNSSEYVPSYEDKDGDWMLVGDVPW MFV+SCKRLRIMKGSEAIGL  P++  K + +
Subjt:  MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQ

AT5G65670.2 indole-3-acetic acid inducible 96.0e-2260.49Show/hide
Query:  GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLK
        G  GA G  D ++E+KL DLLN  +YV +YEDKDGDWMLVGDVPWEMF+D CK+L+IMKG +AIGL  P++   M+K K++
Subjt:  GDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGA
TTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATG
GAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGCAAGTTGATGGATCTTCTGAACAGCTCTGAGTATGTGCCATCCTATGAAGATAAGGATGGTGA
TTGGATGCTGGTGGGAGATGTACCTTGGGAGATGTTTGTTGATTCATGCAAGCGCTTAAGGATAATGAAGGGATCAGAAGCTATTGGACTCGGTATCCCCAAGAGCAATG
GAAAAATGCAAAAGCAGAAGCTGAAGAGAAGGCTTTTGGGGGAGGTGGGTGGCTCCATGATTTGGTCGACCCATAATTAAGCAAGAAAGAAGGGGGCAAGACAGATGGAT
CGAGCATATGGATCTTGTTTGATTGCAATATCTGTACTTTTTTTTTTTTTTTGGCTCTTTTTTTTTTATTTTAATTTTTAATGTTATGATTCGTATATAGATATTAAAAA
GAGATTTGGGACATTAATTAATTTGTAATAGCCAACAAGAAAAAATAAACTCTCTCTCCTAGTACTCTGTCTGGCTGTTTGTTTGTTTTGCTTTTAAATGTTTGTTTATT
ACAAAAAGAACTATAATGGGCTTTGCTTTTATATGCCTTCTCTCTTCTTTTTAATTTTTTTTGCTTTGTTTTCTTTTGTGTTGGTTGTTAAAGATTATTTTGATTCC
Protein sequenceShow/hide protein sequence
MGDYGAQGMIDFMNESKLMDLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLGIPKSNGKMQKQKLKRRLLGEVGGSMIWSTHN