; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G016770 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016770
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionAlba domain-containing protein
Genome locationchr05:24376848..24378250
RNA-Seq ExpressionLsi05G016770
SyntenyLsi05G016770
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134424.1 uncharacterized protein At2g34160 [Cucumis sativus]2.0e-6390.6Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVSE  PEVKNEIRNEEE+LL  A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK L ISSVSLKNGEN KLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

XP_008438573.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]5.3e-6491.28Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SG VVSE TPEVKNEI+NEEEKLL  A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEN KLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]8.4e-6289.26Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MESGMVVSE   E+KNEIRNEEEKLL VA DGEVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEND+LVMKPKIEIAL+NAEK+K IS A T+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]8.4e-6289.93Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MESGMVVSE T EVKNEIRNEEEKLL VA D EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEND+LVMKPKIEIAL+NAEK+K IS A T+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

XP_038877187.1 uncharacterized protein At2g34160-like [Benincasa hispida]7.9e-6895.3Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MESGMVVSEGTPEVKNEIR+EEEKLL VA+DGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQKTLTISSVSLK GENDKLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

TrEMBL top hitse value%identityAlignment
A0A0A0L8F8 Alba domain-containing protein9.7e-6490.6Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SGMVVSE  PEVKNEIRNEEE+LL  A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK L ISSVSLKNGEN KLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

A0A1S3AXD3 uncharacterized protein At2g34160-like2.6e-6491.28Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SG VVSE TPEVKNEI+NEEEKLL  A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEN KLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

A0A5D3CZ81 Alba DNA/RNA-binding protein2.6e-6491.28Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        M+SG VVSE TPEVKNEI+NEEEKLL  A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEN KLVMKPKIEIALVNAEKIKNIS APT+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

A0A6J1EFH1 uncharacterized protein At2g34160-like4.1e-6289.26Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MESGMVVSE   E+KNEIRNEEEKLL VA DGEVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEND+LVMKPKIEIAL+NAEK+K IS A T+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

A0A6J1IXN8 uncharacterized protein At2g34160-like4.1e-6289.93Show/hide
Query:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL
        MESGMVVSE T EVKNEIRNEEEKLL VA D EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILKKNGL
Subjt:  MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGL

Query:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS
        AFQK LTISSVSLKNGEND+LVMKPKIEIAL+NAEK+K IS A T+EDS
Subjt:  AFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341606.1e-2354.37Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP
        +K+N+IQVSN KKP F+Y NL+KR+++QYN+VELSALGMAI TVVT+ EILK NG A +K +  S+V +K+    + V K KIEI LV +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP

Query:  TNE
          E
Subjt:  TNE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein1.7e-2353.4Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP
        +K+N+IQVSN KKP F+Y NL+KR+++QY +VELSALGMAI TVVT+AEILK NG A +K +  S+V +K+    + V K KIEI L  +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP

Query:  TNE
          E
Subjt:  TNE

AT2G34160.1 Alba DNA/RNA-binding protein4.4e-2454.37Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP
        +K+N+IQVSN KKP F+Y NL+KR+++QYN+VELSALGMAI TVVT+ EILK NG A +K +  S+V +K+    + V K KIEI LV +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAP

Query:  TNE
          E
Subjt:  TNE

AT3G04620.1 Alba DNA/RNA-binding protein3.3e-2457.43Show/hide
Query:  KRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPT
        K+N+IQVSN KKP F+Y NL+KR+I+Q+NEVELSALGMAI TVVTI+EILK NGLA +K +  S+V +K+    K+V K KIEI L  ++K  ++    T
Subjt:  KRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISSVSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPT

Query:  N
        N
Subjt:  N


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCCGGCATGGTCGTCTCAGAAGGCACCCCCGAGGTCAAGAATGAAATCCGCAATGAAGAGGAAAAGCTCCTCGCCGTTGCCCACGATGGTGAGGTTAAGGAGAT
TGCTGTTTTGACCGAGTTCAAGAAGAAGAGGAACCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTTTTACTACTACAATCTTTCTAAGAGGCACATTAAGCAGTACA
ATGAAGTTGAGCTCTCTGCATTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAAGAATGGATTGGCTTTTCAAAAGACCTTGACGATATCTTCT
GTCAGTCTGAAGAATGGGGAAAATGACAAGCTGGTTATGAAACCTAAGATTGAGATTGCATTGGTAAATGCAGAAAAGATCAAGAACATTTCAAATGCTCCAACAAATGA
AGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
GGACCGGTCACCGGAAAATGCAGTAACTGCCGGTGTACGGCTACTAAACGAAACCGTTGAGACCTTAACCGCTCAAACGCCTCCGTCGCAACGAACACTGCCTCCGCCAG
TTTCTGATTTCCTTCCCATCCTTCGCCTTCACAATTCTTTATAAATTACTCCTGCAGTTCGATTCCATTTTACCAGAGTTCACAATTAGAAGTAGAATCTTTTCCTTCCT
TCTGCGCACTACTCTGCAGAGAGAGATTAGGCAATGGAGTCCGGCATGGTCGTCTCAGAAGGCACCCCCGAGGTCAAGAATGAAATCCGCAATGAAGAGGAAAAGCTCCT
CGCCGTTGCCCACGATGGTGAGGTTAAGGAGATTGCTGTTTTGACCGAGTTCAAGAAGAAGAGGAACCAAATTCAGGTTTCCAATGTCAAGAAGCCGTTCTTTTACTACT
ACAATCTTTCTAAGAGGCACATTAAGCAGTACAATGAAGTTGAGCTCTCTGCATTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAAGAATGGA
TTGGCTTTTCAAAAGACCTTGACGATATCTTCTGTCAGTCTGAAGAATGGGGAAAATGACAAGCTGGTTATGAAACCTAAGATTGAGATTGCATTGGTAAATGCAGAAAA
GATCAAGAACATTTCAAATGCTCCAACAAATGAAGATTCTTGATACAAGTTTTGTTAGTAGTGTAGTATCTTTCTCGGATCTGGCTTTGCTTCTCGTTTGCCTACTTTGT
CCAGAGTTTCTATAAGAGATTAGAGATTTGCTAGGGAATAGGCGAGTGAATTGCAGATCTTTTAGTCGTAGCAGATTCAATCCTAATAGAACCTAAGGAGAAGAGTTCCT
CTTTTTTTTTCCCCAACGAGGTTCTTAAGGATTGGATGTAGAGGCTTTTTTTGTAATTGAACTACCAACTTCTAATTGCTTTGTAATTGAACTACCAACTTCTTATTGCA
TACAAAATTGGATAAA
Protein sequenceShow/hide protein sequence
MESGMVVSEGTPEVKNEIRNEEEKLLAVAHDGEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKKNGLAFQKTLTISS
VSLKNGENDKLVMKPKIEIALVNAEKIKNISNAPTNEDS