; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G016940 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016940
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr05:24483621..24484187
RNA-Seq ExpressionLsi05G016940
SyntenyLsi05G016940
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049282.1 transcriptional regulator SUPERMAN-like [Cucumis melo var. makuwa]1.3e-7081.67Show/hide
Query:  MNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH--NPNPNIP
        MNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNL H  NPNPNI 
Subjt:  MNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH--NPNPNIP

Query:  SHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        S+D+V FVGRKA DLK S+      AKPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVL DSK DIDLELRLGYST
Subjt:  SHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

KAE8650336.1 hypothetical protein Csa_011537 [Cucumis sativus]6.0e-8185.34Show/hide
Query:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
        ME+NCLRTVYRTSLTTMNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
Subjt:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN

Query:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLG
        LNLNL HNPNPNI S+D+V FVGRKA DLK S   T+IA KPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVLTDSKKDIDLELRLG
Subjt:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLG

XP_004134421.1 transcriptional regulator SUPERMAN [Cucumis sativus]8.4e-8385.57Show/hide
Query:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
        ME+NCLRTVYRTSLTTMNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
Subjt:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN

Query:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        LNLNL HNPNPNI S+D+V FVGRKA DLK S   T+IA KPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVLTDSKKDIDLELRLGYST
Subjt:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

XP_008438560.1 PREDICTED: transcriptional regulator SUPERMAN-like [Cucumis melo]3.3e-7982.14Show/hide
Query:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
        ME+NCLRTVYRTSLT+MNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
Subjt:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN

Query:  LNLNLHH--NPNPNIPSHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        LNLNL H  NPNPNI S+D+V FVGRKA DLK S+      AKPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVL DSK DIDLELRLGYST
Subjt:  LNLNLHH--NPNPNIPSHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

XP_038877188.1 transcriptional regulator SUPERMAN-like [Benincasa hispida]8.3e-9189.01Show/hide
Query:  MERNCLRTVYRTSLTTMNTTIGGGANPANAAVKSQRNKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLN
        MERNCLRTVYRTSLTTMNTTIGGGANPANAAVKSQRNKLCR AEEDFINGISWPPRSY CNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLN
Subjt:  MERNCLRTVYRTSLTTMNTTIGGGANPANAAVKSQRNKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLN

Query:  LNLHHNPNPNIPSHDDVAFVGRKALDLKS---STDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        LNLHHNPNPNIPSHDDVAFVG+KA DLKS   + +IAK N+FE AHW+KGEKFNIGL+IEISTT     STNVLTDS KDIDLELRLGYST
Subjt:  LNLHHNPNPNIPSHDDVAFVGRKALDLKS---STDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

TrEMBL top hitse value%identityAlignment
A0A0A0L9Y8 C2H2-type domain-containing protein4.0e-8385.57Show/hide
Query:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
        ME+NCLRTVYRTSLTTMNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
Subjt:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN

Query:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        LNLNL HNPNPNI S+D+V FVGRKA DLK S   T+IA KPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVLTDSKKDIDLELRLGYST
Subjt:  LNLNLHHNPNPNIPSHDDVAFVGRKALDLKSS---TDIA-KPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

A0A1S3AWP0 transcriptional regulator SUPERMAN-like1.6e-7982.14Show/hide
Query:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
        ME+NCLRTVYRTSLT+MNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN
Subjt:  MERNCLRTVYRTSLTTMNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTN

Query:  LNLNLHH--NPNPNIPSHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        LNLNL H  NPNPNI S+D+V FVGRKA DLK S+      AKPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVL DSK DIDLELRLGYST
Subjt:  LNLNLHH--NPNPNIPSHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

A0A5A7U0H2 Transcriptional regulator SUPERMAN-like6.1e-7181.67Show/hide
Query:  MNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH--NPNPNIP
        MNT TIGGGANP   +VKSQRNK+CR A EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNL H  NPNPNI 
Subjt:  MNT-TIGGGANPANAAVKSQRNKLCRMA-EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH--NPNPNIP

Query:  SHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST
        S+D+V FVGRKA DLK S+      AKPNMFER HW+KGEKFNIGL+IEIS    TTSSTNVL DSK DIDLELRLGYST
Subjt:  SHDDVAFVGRKALDLKSST----DIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST

A0A6J1E9R8 zinc finger protein 11-like2.5e-5666.83Show/hide
Query:  MERNCLRTVYRTSLTTMNTTIGGGANPA----------NAAVKSQRNKLCR---MAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL
        MERNCLRT  RTSLTTMNTTI GG  PA          N A KSQRNK+CR    AEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL
Subjt:  MERNCLRTVYRTSLTTMNTTIGGGANPA----------NAAVKSQRNKLCR---MAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL

Query:  YSPPAD-GQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGY
        YSPPAD   FTNLNLNLHHNP PN P          KAL      +IAKPN        K  KF IGL+IEI+TTN T  +T +    KKDIDLELRLGY
Subjt:  YSPPAD-GQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGY

Query:  ST
        ST
Subjt:  ST

A0A6J1IX36 transcriptional regulator SUPERMAN-like1.9e-5666.34Show/hide
Query:  MERNCLRTVYRTSLTTMNTTI--------------GGGANPANAAVKSQRNKLCR---MAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRD
        MERNCLRT  RTSL TMNTTI              GGG   ANAAVKSQRNK CR    AEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRD
Subjt:  MERNCLRTVYRTSLTTMNTTI--------------GGGANPANAAVKSQRNKLCR---MAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRD

Query:  RALLYSPPAD-GQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLEL
        RALLYSPPAD   FTNLNLNL+HNP PN P          KAL      +IAKPN        K  KF IGL+IEIST   TT++  +LT+SKKDIDLEL
Subjt:  RALLYSPPAD-GQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLEL

Query:  RLGYS
        RLGYS
Subjt:  RLGYS

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 105.4e-1650Show/hide
Query:  EDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGR-KALDLKSSTDIAKPNMFERAH
        ED   G  WPPRSYTC+FC+REF+SAQALGGHMNVHRRDRA L    AD Q+    L    + +P  PSH D   +       L  +T   KPN F+  H
Subjt:  EDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGR-KALDLKSSTDIAKPNMFERAH

Q38895 Transcriptional regulator SUPERMAN4.1e-1681.82Show/hide
Query:  EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL
        + D++ G SWPPRSYTC+FCKREFRSAQALGGHMNVHRRDRA L
Subjt:  EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL

Q9LHS9 Probable transcriptional regulator RABBIT EARS4.2e-1346.88Show/hide
Query:  GISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL----YSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFER
        G  WPPRSY+C+FC REF+SAQALGGHMNVHRRDRA L     SP +  Q T           P       V  VG K L      +  KPN  +R
Subjt:  GISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL----YSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFER

Q9SLB8 Zinc finger protein 113.8e-1458.82Show/hide
Query:  ISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH-----NPNPNIPS
        I WPP++YTC+FC+REFRSAQALGGHMNVHRRDRA L       Q  +     HH     NPNPN  S
Subjt:  ISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH-----NPNPNIPS

Q9SR34 Transcriptional regulator TAC12.7e-0730.86Show/hide
Query:  NPANAAVKSQR-NKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPAD------------GQFTNLNLNLHHNPNPNIP
        NP NA   S   +K      +D +N      RSY C+FC R F +AQALGGHMN+HRRDRA L     +             +  +L+LN          
Subjt:  NPANAAVKSQR-NKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPAD------------GQFTNLNLNLHHNPNPNIP

Query:  SHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYS
        + DD         D     DI+     E   W +  K +     +++  +   SS++   D +  +DLELRLG S
Subjt:  SHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYS

Arabidopsis top hitse value%identityAlignment
AT2G37740.1 zinc-finger protein 103.8e-1750Show/hide
Query:  EDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGR-KALDLKSSTDIAKPNMFERAH
        ED   G  WPPRSYTC+FC+REF+SAQALGGHMNVHRRDRA L    AD Q+    L    + +P  PSH D   +       L  +T   KPN F+  H
Subjt:  EDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGR-KALDLKSSTDIAKPNMFERAH

AT2G42410.1 zinc finger protein 112.7e-1558.82Show/hide
Query:  ISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH-----NPNPNIPS
        I WPP++YTC+FC+REFRSAQALGGHMNVHRRDRA L       Q  +     HH     NPNPN  S
Subjt:  ISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHH-----NPNPNIPS

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein2.9e-1781.82Show/hide
Query:  EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL
        + D++ G SWPPRSYTC+FCKREFRSAQALGGHMNVHRRDRA L
Subjt:  EEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL

AT4G17810.1 C2H2 and C2HC zinc fingers superfamily protein4.2e-1689.47Show/hide
Query:  INGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRA
        I+G +WPPRSYTCNFC+REFRSAQALGGHMNVHRRDRA
Subjt:  INGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRA

AT5G06070.1 C2H2 and C2HC zinc fingers superfamily protein3.0e-1446.88Show/hide
Query:  GISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL----YSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFER
        G  WPPRSY+C+FC REF+SAQALGGHMNVHRRDRA L     SP +  Q T           P       V  VG K L      +  KPN  +R
Subjt:  GISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALL----YSPPADGQFTNLNLNLHHNPNPNIPSHDDVAFVGRKALDLKSSTDIAKPNMFER


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGAACTGTTTACGCACCGTGTATCGTACGAGTTTAACAACAATGAACACGACGATCGGTGGAGGAGCCAACCCCGCCAACGCTGCCGTGAAAAGCCAGAGGAA
CAAGCTGTGCCGGATGGCGGAGGAGGATTTCATAAATGGGATTTCATGGCCTCCAAGAAGTTACACGTGCAACTTTTGCAAAAGGGAATTTAGATCAGCTCAAGCTCTTG
GTGGTCATATGAATGTTCATAGGAGAGATAGAGCTTTGCTTTATTCTCCCCCAGCTGATGGTCAGTTCACAAATCTCAATCTTAACCTTCACCATAACCCTAACCCTAAT
ATCCCATCTCACGACGATGTTGCATTCGTCGGTCGAAAAGCTTTGGATTTGAAATCGTCGACCGACATTGCGAAACCTAATATGTTTGAGAGAGCTCATTGGAGGAAGGG
TGAGAAATTCAATATTGGGTTGGAAATTGAAATCAGTACTACTAATAAGACTACTTCTTCTACCAATGTACTTACTGACTCCAAGAAGGACATTGATTTGGAGCTTCGAT
TAGGGTACTCAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGAACTGTTTACGCACCGTGTATCGTACGAGTTTAACAACAATGAACACGACGATCGGTGGAGGAGCCAACCCCGCCAACGCTGCCGTGAAAAGCCAGAGGAA
CAAGCTGTGCCGGATGGCGGAGGAGGATTTCATAAATGGGATTTCATGGCCTCCAAGAAGTTACACGTGCAACTTTTGCAAAAGGGAATTTAGATCAGCTCAAGCTCTTG
GTGGTCATATGAATGTTCATAGGAGAGATAGAGCTTTGCTTTATTCTCCCCCAGCTGATGGTCAGTTCACAAATCTCAATCTTAACCTTCACCATAACCCTAACCCTAAT
ATCCCATCTCACGACGATGTTGCATTCGTCGGTCGAAAAGCTTTGGATTTGAAATCGTCGACCGACATTGCGAAACCTAATATGTTTGAGAGAGCTCATTGGAGGAAGGG
TGAGAAATTCAATATTGGGTTGGAAATTGAAATCAGTACTACTAATAAGACTACTTCTTCTACCAATGTACTTACTGACTCCAAGAAGGACATTGATTTGGAGCTTCGAT
TAGGGTACTCAACTTAG
Protein sequenceShow/hide protein sequence
MERNCLRTVYRTSLTTMNTTIGGGANPANAAVKSQRNKLCRMAEEDFINGISWPPRSYTCNFCKREFRSAQALGGHMNVHRRDRALLYSPPADGQFTNLNLNLHHNPNPN
IPSHDDVAFVGRKALDLKSSTDIAKPNMFERAHWRKGEKFNIGLEIEISTTNKTTSSTNVLTDSKKDIDLELRLGYST