; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G016950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G016950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionC2H2-type domain-containing protein
Genome locationchr05:24493294..24493776
RNA-Seq ExpressionLsi05G016950
SyntenyLsi05G016950
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650335.1 hypothetical protein Csa_010297 [Cucumis sativus]2.4e-7088.76Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY
        MDFGKQGSWDSSSDEYE QD  H K DD ENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS HSN DQFFPP IPTQP TPSY
Subjt:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY

Query:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGV-WKNEEVDLELRLGHEYR
        Y  PPPPSYRMYFDTAA NFPIHPQI SP VVNQELLGANLSL+IDQ RGV WKNEE+DLELRLGHEYR
Subjt:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGV-WKNEEVDLELRLGHEYR

XP_004134420.3 zinc finger protein 10 [Cucumis sativus]2.4e-7088.76Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY
        MDFGKQGSWDSSSDEYE QD  H K DD ENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS HSN DQFFPP IPTQP TPSY
Subjt:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY

Query:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGV-WKNEEVDLELRLGHEYR
        Y  PPPPSYRMYFDTAA NFPIHPQI SP VVNQELLGANLSL+IDQ RGV WKNEE+DLELRLGHEYR
Subjt:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGV-WKNEEVDLELRLGHEYR

XP_008439363.1 PREDICTED: zinc finger protein 7 [Cucumis melo]7.9e-7489.35Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQH---SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPS
        MDFGKQGSWDSSSDEYEPQD H     DD ENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS HSN DQFFPP IPTQP TPS
Subjt:  MDFGKQGSWDSSSDEYEPQDQH---SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPS

Query:  YY--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
        YY  PPPPSYRMYFDTAA NFPIHPQI SP VVNQELLGANLSLQIDQNRGVW NEE+DLELRLGHEYR
Subjt:  YY--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

XP_022979419.1 zinc finger protein 11-like [Cucurbita maxima]4.2e-6779.77Show/hide
Query:  MDFGKQGSWDSSSDEYEP-------QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPT
        MDFGKQGS DSSSDEY+P       +  H K  T+NDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAK KHRNF HSSSS  HSNDQ FPP+ TQP 
Subjt:  MDFGKQGSWDSSSDEYEP-------QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPT

Query:  PSYYPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
          YYPPPP    SYRMYFDTAA NFPIHPQIRSP VVNQEL GANLSLQIDQ RGVW+NEEVDLELRLGHEYR
Subjt:  PSYYPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

XP_038877191.1 zinc finger protein 7-like [Benincasa hispida]2.3e-8193.33Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQH--SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSS---SHSNDQFFPPIPTQPTPSYY
        MDFGKQGSWDSSSDEYEPQD H    DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSS   SHSNDQFFPPIPTQPTPSYY
Subjt:  MDFGKQGSWDSSSDEYEPQDQH--SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSS---SHSNDQFFPPIPTQPTPSYY

Query:  PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
        PPPPSYRMYFDTAAANFPIHPQIRSP VVNQ+LLGANLSLQIDQNRGVWKNEE+DLELRLGHEYR
Subjt:  PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

TrEMBL top hitse value%identityAlignment
A0A0A0L4H6 C2H2-type domain-containing protein3.1e-6088.59Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY
        MDFGKQGSWDSSSDEYE QD  H K DD ENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS HSN DQFFPP IPTQP TPSY
Subjt:  MDFGKQGSWDSSSDEYEPQDQ-HSK-DDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPSY

Query:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNR
        Y  PPPPSYRMYFDTAA NFPIHPQI SP VVNQELLGANLSL+IDQ R
Subjt:  Y--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNR

A0A1S3AZA2 zinc finger protein 73.8e-7489.35Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQH---SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPS
        MDFGKQGSWDSSSDEYEPQD H     DD ENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS HSN DQFFPP IPTQP TPS
Subjt:  MDFGKQGSWDSSSDEYEPQDQH---SKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS-HSN-DQFFPP-IPTQP-TPS

Query:  YY--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
        YY  PPPPSYRMYFDTAA NFPIHPQI SP VVNQELLGANLSLQIDQNRGVW NEE+DLELRLGHEYR
Subjt:  YY--PPPPSYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

A0A6J1DD81 zinc finger protein 8-like4.8e-6177.84Show/hide
Query:  MDFGKQGSWDSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPPP-
        MDFGKQGSWDSSSDEY PQDQ  KD+T+ DPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAK RN I SSSSHS+DQ FPPI   P  SYYPPPP 
Subjt:  MDFGKQGSWDSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPPP-

Query:  -----SYRMYFD-TAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
             +YRMYFD TAAAN+PIH + RS    N++LLGANL+LQIDQ RGVWKNEE+DLELRLGHEYR
Subjt:  -----SYRMYFD-TAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

A0A6J1E9V2 transcriptional regulator SUPERMAN-like3.8e-6679.41Show/hide
Query:  MDFGKQGSWDSSSDEYEP----QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPTPSY
        MDFGKQG+ DSSSDEY+P    Q  H    T+NDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAK KHRNF HSSSS  HSNDQ FPP+ TQP   Y
Subjt:  MDFGKQGSWDSSSDEYEP----QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPTPSY

Query:  YPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
        YPPPP    SYRMYFDT+A NFPIHPQIRSP V NQELLGA+LSLQIDQ RGVW+NEEVDLELRLGHEYR
Subjt:  YPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

A0A6J1IWL0 zinc finger protein 11-like2.0e-6779.77Show/hide
Query:  MDFGKQGSWDSSSDEYEP-------QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPT
        MDFGKQGS DSSSDEY+P       +  H K  T+NDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAK KHRNF HSSSS  HSNDQ FPP+ TQP 
Subjt:  MDFGKQGSWDSSSDEYEP-------QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSS--HSNDQFFPPIPTQPT

Query:  PSYYPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR
          YYPPPP    SYRMYFDTAA NFPIHPQIRSP VVNQEL GANLSLQIDQ RGVW+NEEVDLELRLGHEYR
Subjt:  PSYYPPPP----SYRMYFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR

SwissProt top hitse value%identityAlignment
O80942 Zinc finger protein 109.5e-0639.47Show/hide
Query:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRN--FIHSSSSHSNDQFFPPIPTQPTPSYYPPPPSYRMYFDT
        R Y C+FC+R F +AQALGGHMN+HR+DRA+ K  +  ++   SS S     P  P+            Y + F+T
Subjt:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRN--FIHSSSSHSNDQFFPPIPTQPTPSYYPPPPSYRMYFDT

Q38895 Transcriptional regulator SUPERMAN3.5e-0837.5Show/hide
Query:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSY------YPPPPSYRMYFDTAAANFPIHPQIRSPIV
        R Y C+FCKR F +AQALGGHMN+HR+DRA+ + +    SSS+        P P  P P+Y        PPP +         + P  P+ R+ ++
Subjt:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSY------YPPPPSYRMYFDTAAANFPIHPQIRSPIV

Q9LHS9 Probable transcriptional regulator RABBIT EARS1.0e-0755.77Show/hide
Query:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPP
        R Y C+FC R F +AQALGGHMN+HR+DRA+ K +    S S  S DQ  PP
Subjt:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPP

Q9SLB8 Zinc finger protein 118.1e-0538.27Show/hide
Query:  YECTFCKRGFTNAQALGGHMNIHRKDRAKAK------------------HRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPP
        Y C+FC+R F +AQALGGHMN+HR+DRAK +                  + NF  SSSS +      P  T       P P
Subjt:  YECTFCKRGFTNAQALGGHMNIHRKDRAKAK------------------HRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPP

Q9SR34 Transcriptional regulator TAC16.0e-0852.54Show/hide
Query:  DSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHR
        D  SD          DD+ N    R Y C+FC RGF+NAQALGGHMNIHR+DRAK + +
Subjt:  DSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHR

Arabidopsis top hitse value%identityAlignment
AT3G09290.1 telomerase activator14.2e-0952.54Show/hide
Query:  DSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHR
        D  SD          DD+ N    R Y C+FC RGF+NAQALGGHMNIHR+DRAK + +
Subjt:  DSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHR

AT3G23130.1 C2H2 and C2HC zinc fingers superfamily protein2.5e-0937.5Show/hide
Query:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSY------YPPPPSYRMYFDTAAANFPIHPQIRSPIV
        R Y C+FCKR F +AQALGGHMN+HR+DRA+ + +    SSS+        P P  P P+Y        PPP +         + P  P+ R+ ++
Subjt:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSY------YPPPPSYRMYFDTAAANFPIHPQIRSPIV

AT3G23140.1 C2H2 and C2HC zinc fingers superfamily protein9.5e-0932.87Show/hide
Query:  QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPS---YYPPPPSYRMYFDTAAANFPIH
        +D+     + +   +R Y+C  CKRGFTN QALGGH NIHR++R +     +  SSSS  +  F  P+P+Q   S   +  PPP    YF T  +   +H
Subjt:  QDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPS---YYPPPPSYRMYFDTAAANFPIH

Query:  PQIRSPI--VVNQELLGANLSLQIDQNRGVWKNEEVDLELRLG
           + PI    N +  G++ S +         + +++L L LG
Subjt:  PQIRSPI--VVNQELLGANLSLQIDQNRGVWKNEEVDLELRLG

AT3G53820.1 C2H2 and C2HC zinc fingers superfamily protein4.5e-1169.05Show/hide
Query:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSS
        RPY C FC+RGF+NAQALGGHMNIHRKDRAK +  N     S
Subjt:  RPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSS

AT5G43540.1 C2H2 and C2HC zinc fingers superfamily protein1.5e-0934.64Show/hide
Query:  KQGSWDSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRA-KAKHRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPPPSYRM
        ++ S  +SS+    + + +   + +  T+R YECTFCKRGFTNAQALGGHMNIHR+DR  KAK +N    + S ++  F            Y    S  +
Subjt:  KQGSWDSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRA-KAKHRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPPPSYRM

Query:  YFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLG
           T  +N+  H +I S     + +              V +  E+DLELRLG
Subjt:  YFDTAAANFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTGGAAAACAGGGGAGCTGGGACAGTTCGAGCGATGAATATGAACCACAAGACCAACATTCGAAAGACGACACTGAAAATGACCCCACAAAACGCCCTTACGA
GTGCACATTTTGCAAGCGTGGCTTCACTAACGCTCAAGCCCTTGGTGGCCATATGAACATCCATCGCAAAGACAGAGCCAAAGCCAAACATCGCAATTTTATTCATTCCT
CTTCTTCTCATTCCAATGACCAATTTTTCCCTCCTATTCCAACTCAACCCACTCCCTCTTATTACCCTCCGCCTCCATCTTACCGGATGTACTTCGACACCGCCGCCGCT
AACTTCCCTATTCACCCACAGATCAGATCCCCCATCGTCGTCAATCAAGAACTTCTTGGAGCCAATCTCAGCCTTCAAATTGATCAAAACAGGGGTGTCTGGAAAAATGA
AGAAGTCGATTTGGAGCTTCGACTTGGCCATGAATATCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTGGAAAACAGGGGAGCTGGGACAGTTCGAGCGATGAATATGAACCACAAGACCAACATTCGAAAGACGACACTGAAAATGACCCCACAAAACGCCCTTACGA
GTGCACATTTTGCAAGCGTGGCTTCACTAACGCTCAAGCCCTTGGTGGCCATATGAACATCCATCGCAAAGACAGAGCCAAAGCCAAACATCGCAATTTTATTCATTCCT
CTTCTTCTCATTCCAATGACCAATTTTTCCCTCCTATTCCAACTCAACCCACTCCCTCTTATTACCCTCCGCCTCCATCTTACCGGATGTACTTCGACACCGCCGCCGCT
AACTTCCCTATTCACCCACAGATCAGATCCCCCATCGTCGTCAATCAAGAACTTCTTGGAGCCAATCTCAGCCTTCAAATTGATCAAAACAGGGGTGTCTGGAAAAATGA
AGAAGTCGATTTGGAGCTTCGACTTGGCCATGAATATCGCTGA
Protein sequenceShow/hide protein sequence
MDFGKQGSWDSSSDEYEPQDQHSKDDTENDPTKRPYECTFCKRGFTNAQALGGHMNIHRKDRAKAKHRNFIHSSSSHSNDQFFPPIPTQPTPSYYPPPPSYRMYFDTAAA
NFPIHPQIRSPIVVNQELLGANLSLQIDQNRGVWKNEEVDLELRLGHEYR