CuGenDBv2

Gene ID	Lsi05G017610
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	Acidic leucine-rich nuclear phosphoprotein 32-related protein 2
Genome location	chr05:24979386..24981296
RNA-Seq Expression	Lsi05G017610
Synteny	Lsi05G017610
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049218.1 uncharacterized protein E6C27_scaffold171G004580 [Cucumis melo var. makuwa]

9.2e-38

93.41

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
        MDGDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS

KAG6582410.1 hypothetical protein SDJN03_22412, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-36

85.26

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        M GDS+ VNG  ++++DS  AGEVGDH NGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

XP_004134046.1 uncharacterized protein LOC101205158 [Cucumis sativus]

2.9e-39

93.55

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Query:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        GDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Subjt:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

XP_008438475.1 PREDICTED: uncharacterized protein LOC103483558 isoform X2 [Cucumis melo]

9.2e-38

93.41

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
        MDGDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS

XP_038897861.1 uncharacterized protein LOC120085750 [Benincasa hispida]

1.7e-39

91.58

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        MDGDSKDVNGCK+K MDS   GEVGDHSNGE+ SESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEE DSCSCIIM
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L701 Uncharacterized protein

1.4e-39

93.55

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Query:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        GDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
Subjt:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

A0A1S3AX40 uncharacterized protein LOC103483558 isoform X2

4.5e-38

93.41

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
        MDGDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS

A0A5A7U1V8 Uncharacterized protein

4.5e-38

93.41

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
        MDGDSKDVNGCK+KTMDS  AGEVGDHSNGE+ SESNALLPPRRGGMSRK NKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCS

A0A6J1EBY1 uncharacterized protein LOC111431793

2.4e-36

85.26

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        M GDS+ VNG  ++++DS  AGEVGDH NGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

A0A6J1INK9 uncharacterized protein LOC111479120

1.2e-35

84.21

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Query:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        M GDS+ VNG  ++++DS  AGEVGDH N EDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEE+DSCSC+IM
Subjt:  MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G34010.1 unknown protein

5.4e-04

46.67

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Query:  RMKVRWNDSNGNNLAEILEFQPSDVSDSGDE----EADSCSCIIM
        R KV+W D+ G  +AE+ EF+PS+V +S DE       SC C IM
Subjt:  RMKVRWNDSNGNNLAEILEFQPSDVSDSGDE----EADSCSCIIM

AT1G55475.1 unknown protein

5.4e-04

44.19

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Query:  KPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        + + KV+W D  G  LAEI EF+PSD  D   +   +C CII+
Subjt:  KPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

AT2G33390.1 unknown protein

1.4e-20

49.46

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Query:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM
        G+ K+ NGC++K + S ++ E+ D    E++SES  LLPPR+GGMSR ++K +  V+WND  G+NLAE+L ++PS+VSD+ D+++DSC C IM
Subjt:  GDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

Sequences

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CDS sequence

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ATGGATGGCGATTCTAAGGATGTTAATGGCTGTAAAGACAAGACTATGGACTCTACGGACGCCGGAGAAGTTGGGGATCACAGTAACGGCGAAGATGACAGCGAATCAAA
TGCCCTATTGCCGCCGCGGCGTGGAGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTGGAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGT
TTCAACCGAGTGATGTGAGCGACTCCGGGGACGAGGAGGCTGATTCTTGCAGCTGTATAATTATGTAG

mRNA sequence

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TTCTCGCGATCTGTACAACGCATCACTTCATCGCAATTTTACAATTTTGAGTTAAAATTTCGTTCCGTTATGTTATATAATGAAACCCCCGCTTTTTTATTTTTATTTTC
ATTTTCAATTTGGGTTTTGGAGAGTATTTGATTTTCTCACTTTCTCGGGAATCTATCTATTCTAATCCCTTCTTTTTGTTCATAGCTTTGTTGGGTTAAAATTTCAGATC
GGGGGTTTTACATTCCGGAGGGGTTTTTTGATGGGGTTATTGGGTTCATAAATTTTGAACCCGTGAGCGTTGACCCAGTTGCGGAATCGGAGTTTCGAGTGGCTGAATTG
TGAGAAATTTTCATTTTCTTTTTCTTGGGGTTTAGATGGAGTGGATTTCTGAGATGATTCGATTCAGAAATCTGAAATCTGGGTCCGATTTTTGGTGTAGTTGATAGGGT
AAATTTCCGAGTGGATTTGTAGTTAGTGAGAGTTTCGAACTATGGATGGCGATTCTAAGGATGTTAATGGCTGTAAAGACAAGACTATGGACTCTACGGACGCCGGAGAA
GTTGGGGATCACAGTAACGGCGAAGATGACAGCGAATCAAATGCCCTATTGCCGCCGCGGCGTGGAGGAATGTCGAGGAAATCGAATAAGCCGAGGATGAAAGTCCGGTG
GAATGATAGTAATGGTAATAACCTAGCGGAGATTTTGGAGTTTCAACCGAGTGATGTGAGCGACTCCGGGGACGAGGAGGCTGATTCTTGCAGCTGTATAATTATGTAGA
TTATTACATCAACTATTAGTATATAATGACAAGAACAATGTGGTTGCTTTAAGACTAAACTGATAATAATTGGAGATGTTTCTGACTGTATACCGGATTGCTTTGCTACT
ACGACGACTGGCAGAAAAGTTCGAAGATCGGTTGATTAACATGTCGTTACACCTTGCGGTTTCTGGCGATGTGTCCCAGTGACATCTTGTACTGTTTCGGTTTTTTTCCG
AATTTGTGAGATCACTTTCCAGGTGATGTACTATATGGATGATGCTGATATTGATATTATTAAATCAAACATTCAGATTAGTTGAGCTTTTGACAGTGCAAATGATACAC
ATTGTGTAATGCAAACACTTGGAATTTTTCATATACTTATCATGAATTCTAGAGCTTCTCTACTCT

Protein sequence

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MDGDSKDVNGCKDKTMDSTDAGEVGDHSNGEDDSESNALLPPRRGGMSRKSNKPRMKVRWNDSNGNNLAEILEFQPSDVSDSGDEEADSCSCIIM

Lsi05G017610 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome