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Lsi05G017950 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G017950
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionF-box domain-containing protein
Genome locationchr05:25260778..25264036
RNA-Seq ExpressionLsi05G017950
SyntenyLsi05G017950
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR001810 - F-box domain
IPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018833.1 hypothetical protein SDJN02_20706 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-10186.73Show/hide
Query:  MAQTDFL--GVGARWKARKKKRENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAW
        MAQ+DFL   + AR K +KKKRE+VS  +GQQNGTRN LLQDPFEVLG DLLM ILSY+DARSVALSLLVSRSWYAVASSDRLW+SKTRIMREDLC HAW
Subjt:  MAQTDFL--GVGARWKARKKKRENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMREDLCDHAW

Query:  QFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIA
        QFHFNKEAP+YWR+LDPYWQGSH LMRRYFHPDGSQTADPDDRVWGGHE CFSTVTSF+GDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIA
Subjt:  QFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIA

Query:  DAEKAGGTGPV
        DA+K  GTGP+
Subjt:  DAEKAGGTGPV

XP_004134023.1 uncharacterized protein LOC101220252 isoform X2 [Cucumis sativus]4.5e-10278.14Show/hide
Query:  MAQTDFLGVGARWKAR--KKKRENVSYGRGQQNG-TRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------
        MAQ+DFLG GARWK+R  KKKRE VS  RGQQN  TRN LLQDPFEVLGSDLL+AILSYLDARSVALSL VSRSWYAVASSDRLWSSK            
Subjt:  MAQTDFLGVGARWKAR--KKKRENVSYGRGQQNG-TRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------

Query:  -----------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI
                               TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDG+QTADPDDRVWGGHESCFSTVTSFVGDGEI
Subjt:  -----------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI

Query:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        REHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD EK GGTGP+
Subjt:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

XP_008438424.1 PREDICTED: uncharacterized protein LOC103483521 isoform X2 [Cucumis melo]1.9e-10587.67Show/hide
Query:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR
        MAQ+DFL  GARWK R         KKKRE VS  RGQQN  T N +LQDPFEVLGSDLLM ILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR
Subjt:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR

Query:  EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNH
        EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNH
Subjt:  EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNH

Query:  FTSYSSIADAEKAGGTGPV
        FTSYSSIAD +KAGGTGP+
Subjt:  FTSYSSIADAEKAGGTGPV

XP_022157960.1 uncharacterized protein LOC111024557 isoform X2 [Momordica charantia]1.5e-10582.2Show/hide
Query:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA
        M+IAD SSS K FS NPS   SFEFM QTD LG GA WK RKKK+ ENVS  R  +NG+ NVLLQDP +VLG DLLMAIL Y+DARSVALSLLVSRSWYA
Subjt:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA

Query:  VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWP
        VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGS  LMRRYFHPDGSQTADPDDRVWGGHE CFS VTSF G DG+IREHYVRINRWP
Subjt:  VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWP

Query:  RMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        RM VSRNEDWSWK+SN   SYSSIADA+K GGTGP+
Subjt:  RMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

XP_038875840.1 uncharacterized protein LOC120068200 [Benincasa hispida]1.6e-10780.74Show/hide
Query:  MAQTDFLGVGARWKARKKKRENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK---------------
        MAQ+D LG GARWK RKKKRENVS GR QQNGTRNVLLQDPFEVLGSDL MAILSYLDARSVALSLLVSRSWYA+ASSDRLWSSK               
Subjt:  MAQTDFLGVGARWKARKKKRENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK---------------

Query:  --------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH
                            TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDGSQTADPDDRVWGGHESCF TVTSFVGDGEIREH
Subjt:  --------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREH

Query:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        YVRIN+WPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGP+
Subjt:  YVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

TrEMBL top hitse value%identityAlignment
A0A0A0L471 F-box domain-containing protein2.2e-10278.14Show/hide
Query:  MAQTDFLGVGARWKAR--KKKRENVSYGRGQQNG-TRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------
        MAQ+DFLG GARWK+R  KKKRE VS  RGQQN  TRN LLQDPFEVLGSDLL+AILSYLDARSVALSL VSRSWYAVASSDRLWSSK            
Subjt:  MAQTDFLGVGARWKAR--KKKRENVSYGRGQQNG-TRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK------------

Query:  -----------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI
                               TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDG+QTADPDDRVWGGHESCFSTVTSFVGDGEI
Subjt:  -----------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEI

Query:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        REHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD EK GGTGP+
Subjt:  REHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

A0A1S3AW05 uncharacterized protein LOC103483521 isoform X29.4e-10687.67Show/hide
Query:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR
        MAQ+DFL  GARWK R         KKKRE VS  RGQQN  T N +LQDPFEVLGSDLLM ILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR
Subjt:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSKTRIMR

Query:  EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNH
        EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNH
Subjt:  EDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNH

Query:  FTSYSSIADAEKAGGTGPV
        FTSYSSIAD +KAGGTGP+
Subjt:  FTSYSSIADAEKAGGTGPV

A0A1S3AWZ4 uncharacterized protein LOC103483521 isoform X12.0e-10075.59Show/hide
Query:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK-----
        MAQ+DFL  GARWK R         KKKRE VS  RGQQN  T N +LQDPFEVLGSDLLM ILSYLDARSVALSLLVSRSWYAVASSDRLWSSK     
Subjt:  MAQTDFLGVGARWKAR---------KKKRENVSYGRGQQN-GTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK-----

Query:  ------------------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
                                      TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSH LMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS
Subjt:  ------------------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTS

Query:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        FVGDGEIREHYVRINRWPRMFVSRNEDWSW+MSNHFTSYSSIAD +KAGGTGP+
Subjt:  FVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

A0A6J1DUH1 uncharacterized protein LOC111024557 isoform X27.2e-10682.2Show/hide
Query:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA
        M+IAD SSS K FS NPS   SFEFM QTD LG GA WK RKKK+ ENVS  R  +NG+ NVLLQDP +VLG DLLMAIL Y+DARSVALSLLVSRSWYA
Subjt:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA

Query:  VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWP
        VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGS  LMRRYFHPDGSQTADPDDRVWGGHE CFS VTSF G DG+IREHYVRINRWP
Subjt:  VASSDRLWSSKTRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWP

Query:  RMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        RM VSRNEDWSWK+SN   SYSSIADA+K GGTGP+
Subjt:  RMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

A0A6J1DUS5 uncharacterized protein LOC111024557 isoform X11.6e-10071.59Show/hide
Query:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA
        M+IAD SSS K FS NPS   SFEFM QTD LG GA WK RKKK+ ENVS  R  +NG+ NVLLQDP +VLG DLLMAIL Y+DARSVALSLLVSRSWYA
Subjt:  MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKR-ENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYA

Query:  VASSDRLWSSK-----------------------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPD
        VASSDRLWSSK                                   TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGS  LMRRYFHPDGSQTADPD
Subjt:  VASSDRLWSSK-----------------------------------TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPD

Query:  DRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV
        DRVWGGHE CFS VTSF G DG+IREHYVRINRWPRM VSRNEDWSWK+SN   SYSSIADA+K GGTGP+
Subjt:  DRVWGGHESCFSTVTSFVG-DGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYSSIADAEKAGGTGPV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAATCGCCGATCGTTCATCCTCTTCAAAACCCTTCTCTATAAACCCCTCTCGCCTCTTGAGCTTTGAATTTATGGCGCAAACCGACTTCCTCGGCGTCGGAGCGCG
GTGGAAGGCAAGGAAGAAGAAGCGAGAGAATGTCTCGTATGGACGAGGGCAACAAAATGGAACCCGAAATGTTCTTCTCCAAGATCCTTTCGAGGTTTTAGGTTCTGATC
TATTAATGGCGATACTGAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTCCTCGTCTCTCGATCTTGGTATGCCGTAGCTTCCAGCGATCGCCTATGGAGTTCGAAG
ACTCGCATTATGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAATAAGGAAGCTCCGGTCTACTGGCGAGATCTCGATCCATACTGGCAAGGCAGCCACAC
TCTCATGCGCCGTTATTTCCATCCCGATGGGAGCCAAACTGCAGATCCTGATGATAGAGTATGGGGTGGCCATGAGAGCTGCTTTTCCACAGTTACAAGTTTTGTTGGCG
ATGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTTGTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCACTTCACCTCGTACTCG
AGCATAGCCGATGCTGAAAAGGCTGGCGGGACGGGTCCAGTTTAA
mRNA sequenceShow/hide mRNA sequence
AACTGGCTTTCATTCTTCTATTATTATTATTTGCAATTGCTGTTCCCTCAGCAATCAATGTTAATCGCCGATCGTTCATCCTCTTCAAAACCCTTCTCTATAAACCCCTC
TCGCCTCTTGAGCTTTGAATTTATGGCGCAAACCGACTTCCTCGGCGTCGGAGCGCGGTGGAAGGCAAGGAAGAAGAAGCGAGAGAATGTCTCGTATGGACGAGGGCAAC
AAAATGGAACCCGAAATGTTCTTCTCCAAGATCCTTTCGAGGTTTTAGGTTCTGATCTATTAATGGCGATACTGAGCTACCTCGATGCACGCAGCGTGGCACTTTCTCTC
CTCGTCTCTCGATCTTGGTATGCCGTAGCTTCCAGCGATCGCCTATGGAGTTCGAAGACTCGCATTATGAGGGAGGATTTATGTGATCATGCCTGGCAATTTCACTTCAA
TAAGGAAGCTCCGGTCTACTGGCGAGATCTCGATCCATACTGGCAAGGCAGCCACACTCTCATGCGCCGTTATTTCCATCCCGATGGGAGCCAAACTGCAGATCCTGATG
ATAGAGTATGGGGTGGCCATGAGAGCTGCTTTTCCACAGTTACAAGTTTTGTTGGCGATGGGGAGATCAGAGAACACTATGTGAGGATAAACAGATGGCCAAGAATGTTT
GTGTCAAGGAATGAAGATTGGAGCTGGAAGATGTCGAATCACTTCACCTCGTACTCGAGCATAGCCGATGCTGAAAAGGCTGGCGGGACGGGTCCAGTTTAACAGCAGCT
GGTGATAAAATTGCTTGTTTCCTCTTTCTTGAAGAGGCTGCTGCTTTGCTGTGTACAGAATTCTTGGGAGTATAGGAAAGGAATTGGTGTTGGTTTTGGTTTTGGTTTTG
GATCCCAAGTTATTTTGGTCCTTTGCCTAAAAATGGGAGTAGAGTTTGTATGCTTGTAGAATTTGTTTATTATTAATATTTTTTCCTTAGAGAAAATGTATTTAGTTGTT
GCTTACTAGTAAGTAGTAAGATTTGAAATAATTAGTTGAGTTCCTGTTTGATG
Protein sequenceShow/hide protein sequence
MLIADRSSSSKPFSINPSRLLSFEFMAQTDFLGVGARWKARKKKRENVSYGRGQQNGTRNVLLQDPFEVLGSDLLMAILSYLDARSVALSLLVSRSWYAVASSDRLWSSK
TRIMREDLCDHAWQFHFNKEAPVYWRDLDPYWQGSHTLMRRYFHPDGSQTADPDDRVWGGHESCFSTVTSFVGDGEIREHYVRINRWPRMFVSRNEDWSWKMSNHFTSYS
SIADAEKAGGTGPV