CuGenDBv2

Gene ID	Lsi05G018190
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	DNA repair protein REV1
Genome location	chr05:25452471..25484359
RNA-Seq Expression	Lsi05G018190
Synteny	Lsi05G018190
Gene Ontology terms	GO:0019985 - translesion synthesis (biological process) GO:0003677 - DNA binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	IPR001126 - UmuC domain IPR036420 - BRCT domain superfamily IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0043485.1 DNA repair protein REV1 isoform X1 [Cucumis melo var. makuwa]

2.1e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

XP_016898826.1 PREDICTED: DNA repair protein REV1 isoform X1 [Cucumis melo]

2.1e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

XP_016898828.1 PREDICTED: DNA repair protein REV1 isoform X2 [Cucumis melo]

2.1e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

XP_016898829.1 PREDICTED: DNA repair protein REV1 isoform X3 [Cucumis melo]

2.1e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

XP_038888412.1 DNA repair protein REV1 [Benincasa hispida]

2.4e-33

34.18

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Query:  PCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKMNLR
        P  K TWILDSVA NKLLSWVPYQLDQL                                                           RAEMHSDS+MNL+
Subjt:  PCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKMNLR

Query:  DNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID--------------------------
        DNADAELNEKSSDDLEAT LKDTNISDVD S EYKPQV ESFEM PRKDAD                    ++D                          
Subjt:  DNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID--------------------------

Query:  ----------------------------------------------------------SSLFAHI-----YQ----------------------------
                                                                  SS+ +H+     YQ                            
Subjt:  ----------------------------------------------------------SSLFAHI-----YQ----------------------------

Query:  -------------------------GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE
                                 GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV                 VSCDE FLDISGTN VD E
Subjt:  -------------------------GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE

TrEMBL top hits

e value

%identity

Alignment

A0A1S4DS62 DNA repair protein REV1

1.0e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

A0A1S4DS66 DNA repair protein REV1

1.0e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

A0A1S4DS83 DNA repair protein REV1

1.0e-29

32.41

Show/hide

Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

A0A5A7TPZ8 DNA repair protein REV1

1.0e-29

32.41

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                           RAEMHSDS M
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL----------------------------------------------------------NRAEMHSDSKM

Query:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------
        NL+ NADAE+NEKSSDDLEA  LKDT+ISDVDVS EYKP   ESFEMLP+KDAD                    I+D                       
Subjt:  NLRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID-----------------------

Query:  -------------------------------------------------------------SSLFAHI--------------------------------
                                                                     +S+ +HI                                
Subjt:  -------------------------------------------------------------SSLFAHI--------------------------------

Query:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE
                                    GVRAGMFVRDAKALCPHLVIFPYDFKSYE                 + VSCDE FLDISGTN VD E
Subjt:  --------------------------YQGVRAGMFVRDAKALCPHLVIFPYDFKSYE-----------------EVVSCDEEFLDISGTNEVDLE

A0A6J1I4X1 DNA repair protein REV1

6.7e-29

32.23

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Query:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL---------------------------------------------------------NRAEMHSDSKMN
        R  P  K TWILDSVASNKLLSWVPYQLDQL                                                         +R EMHSDS+MN
Subjt:  RWTPCCKTTWILDSVASNKLLSWVPYQLDQL---------------------------------------------------------NRAEMHSDSKMN

Query:  LRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID------------------------
        L+DNAD ELNEK SDDL+A  LKDT+ISDVD S EY PQ+ ESFEMLPRK+AD                    I+D                        
Subjt:  LRDNADAELNEKSSDDLEATNLKDTNISDVDVSTEYKPQVFESFEMLPRKDAD-------------------SIID------------------------

Query:  ------------------------------------------------------------SSLFAHI-----YQ--------------------------
                                                                    +S+ +HI     YQ                          
Subjt:  ------------------------------------------------------------SSLFAHI-----YQ--------------------------

Query:  ---------------------------GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE
                                   GVRAGMFVRDAKALCP LVIFPYDFKSYEEV                 VSCDE FLDISGT++VD E
Subjt:  ---------------------------GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE

SwissProt top hits

e value

%identity

Alignment

A3EWL3 DNA repair protein REV1

4.3e-09

49.25

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Query:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE
        GV+AGMFVR AK LCP LVI PY+F++YEEV                 +SCDE FLD+S  ++V+ E
Subjt:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE

A3EWL3 DNA repair protein REV1

5.9e-06

58.33

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Query:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN
        +   R  P  K TWI+DS+++N+LL WVPYQLDQLN
Subjt:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN

Q9W0P2 DNA repair protein Rev1

5.5e-04

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Query:  QGVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDIS
        +G+R GMFV  A  LCP L   PYDF+ Y+EV                 VSCDE F++++
Subjt:  QGVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDIS

Arabidopsis top hits

e value

%identity

Alignment

AT5G44750.1 DNA-directed DNA polymerases

3.1e-10

49.25

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Query:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE
        GV+AGMFVR AK LCP LVI PY+F++YEEV                 +SCDE FLD+S  ++V+ E
Subjt:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE

AT5G44750.1 DNA-directed DNA polymerases

4.2e-07

58.33

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Query:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN
        +   R  P  K TWI+DS+++N+LL WVPYQLDQLN
Subjt:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN

AT5G44750.2 DNA-directed DNA polymerases

3.1e-10

49.25

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Query:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE
        GV+AGMFVR AK LCP LVI PY+F++YEEV                 +SCDE FLD+S  ++V+ E
Subjt:  GVRAGMFVRDAKALCPHLVIFPYDFKSYEEV-----------------VSCDEEFLDISGTNEVDLE

AT5G44750.2 DNA-directed DNA polymerases

4.2e-07

58.33

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Query:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN
        +   R  P  K TWI+DS+++N+LL WVPYQLDQLN
Subjt:  QVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLN

Sequences

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CDS sequence

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ATGGGGCTACGACGGCTATTCCGATTAAGGGATTTGACAACGAGCGACATGAGAGATATACTAGTGCCTGGATCAATTTCAGAGACTGGATGGTCTGGTTCATGTGTAGT
TTATGGCGAACAAGTCCTTCAGCGGTGGACTCCCTGTTGTAAAACCACATGGATCTTGGATTCTGTTGCTTCTAATAAGCTATTAAGCTGGGTTCCTTACCAACTTGATC
AACTTAATAGAGCAGAGATGCATTCTGACTCTAAAATGAATCTTCGAGATAATGCAGATGCTGAACTGAATGAGAAGTCAAGTGATGATTTAGAGGCTACCAATCTAAAG
GATACAAATATATCCGATGTAGATGTATCTACTGAATATAAACCACAAGTTTTTGAAAGTTTTGAGATGCTTCCTCGAAAGGATGCTGATAGTATAATTGATTCTTCTCT
CTTTGCCCATATCTATCAAGGAGTAAGAGCAGGAATGTTTGTTAGAGATGCAAAGGCTCTTTGTCCCCATCTTGTTATTTTTCCATATGACTTCAAGTCCTATGAGGAGG
TTGTAAGTTGTGATGAAGAATTTTTGGATATCTCGGGCACAAACGAGGTAGATCTTGAGGAAAATCAGGTGACGAAGTTGATTGATTCCAACGAATCCATATTAAATTAA

mRNA sequence

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Protein sequence

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MGLRRLFRLRDLTTSDMRDILVPGSISETGWSGSCVVYGEQVLQRWTPCCKTTWILDSVASNKLLSWVPYQLDQLNRAEMHSDSKMNLRDNADAELNEKSSDDLEATNLK
DTNISDVDVSTEYKPQVFESFEMLPRKDADSIIDSSLFAHIYQGVRAGMFVRDAKALCPHLVIFPYDFKSYEEVVSCDEEFLDISGTNEVDLEENQVTKLIDSNESILN

Lsi05G018190 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome