CuGenDBv2

Gene ID	Lsi05G018700
Organism	Lagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description	PPIase cyclophilin-type domain-containing protein
Genome location	chr05:25923732..25931552
RNA-Seq Expression	Lsi05G018700
Synteny	Lsi05G018700
Gene Ontology terms	GO:0000413 - protein peptidyl-prolyl isomerization (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003755 - peptidyl-prolyl cis-trans isomerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049126.1 Peptidyl-prolyl cis-trans isomerase-like 3 [Cucumis melo var. makuwa]

4.6e-25

59.05

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKL+SSRECCLACKAMCDDQSG C C+SWVFCGD+K CGP FG                                 EGIIRMETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIKV
        FRIK+
Subjt:  FRIKV

XP_024440386.1 uncharacterized protein LOC18105094 isoform X3 [Populus trichocarpa]

3.0e-24

67.09

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGEGIIRMETENGPFRIKV--GCFLH
        ELWGDAVKWGS+FK+NSS+ CCLACK MC   SG C CDSWVFCGD + CG KFGEGII +ETE G   +K+  GC  H
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGEGIIRMETENGPFRIKV--GCFLH

XP_031739030.1 uncharacterized protein LOC101208677 [Cucumis sativus]

2.7e-25

59.05

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKLNSSRECCLACKAMCD  SG C+CDSWVFCGD+K CGP FG                                 EGIIRMETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIKV
        FRIK+
Subjt:  FRIKV

XP_038895640.1 uncharacterized protein LOC120083824 isoform X1 [Benincasa hispida]

5.4e-26

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQ GRC CDSWVFCGDAK CGP FG                                 EGII +ETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIKV
        FRIK+
Subjt:  FRIKV

XP_038895647.1 uncharacterized protein LOC120083824 isoform X2 [Benincasa hispida]

7.0e-26

60.58

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQ GRC CDSWVFCGDAK CGP FG                                 EGII +ETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIK
        FRIK
Subjt:  FRIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4L1 PPIase cyclophilin-type domain-containing protein

1.3e-25

59.05

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKLNSSRECCLACKAMCD  SG C+CDSWVFCGD+K CGP FG                                 EGIIRMETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIKV
        FRIK+
Subjt:  FRIKV

A0A1S4DTC2 uncharacterized protein LOC103483456

2.4e-24

58.65

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKL+SSRECCLACKAMCDDQSG C C+SWVFCGD+K CGP  G                                 EGIIRMETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIK
        FRIK
Subjt:  FRIK

A0A5A7U4D8 Peptidyl-prolyl cis-trans isomerase-like 3

2.2e-25

59.05

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP
        ELWGDAVKWGSDFKL+SSRECCLACKAMCDDQSG C C+SWVFCGD+K CGP FG                                 EGIIRMETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFG---------------------------------EGIIRMETENGP

Query:  FRIKV
        FRIK+
Subjt:  FRIKV

A0A5D3D0E4 Peptidyl-prolyl cis-trans isomerase-like 3

1.0e-22

87.5

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE
        ELWGDAVKWGSDFKL+SSRECCLACKAMCDDQSG C C+SWVFCGD+K CGP FGE
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE

A0A6J1IZ28 uncharacterized protein LOC111479746

4.6e-23

53.33

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE---------------------------------GIIRMETENGP
        ELWG AVKWGS+FK NSSRECCLACKAMC+DQ GRC CDSWVFCGD+K CG +FGE                                 GI+R+ETE G 
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE---------------------------------GIIRMETENGP

Query:  FRIKV
        FR+K+
Subjt:  FRIKV

SwissProt top hits

e value

%identity

Alignment

Q9SL02 DNA repair protein RAD50

4.2e-13

38.46

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Query:  YTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKVQLS----------------------------------------------------------
        YTKALEVIKKLHKDQA EIKT+KLKLENLQTLKDAAYK++ S                                                          
Subjt:  YTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKVQLS----------------------------------------------------------

Query:  ------GILHIPKYDTDEELKEWKTKFEDRIAILESKYKSWMR
                L     DT EELKEWK+KFE+R+A+L +K +   R
Subjt:  ------GILHIPKYDTDEELKEWKTKFEDRIAILESKYKSWMR

Arabidopsis top hits

e value

%identity

Alignment

AT2G31970.1 DNA repair-recombination protein (RAD50)

3.0e-14

38.46

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Query:  YTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKVQLS----------------------------------------------------------
        YTKALEVIKKLHKDQA EIKT+KLKLENLQTLKDAAYK++ S                                                          
Subjt:  YTKALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKVQLS----------------------------------------------------------

Query:  ------GILHIPKYDTDEELKEWKTKFEDRIAILESKYKSWMR
                L     DT EELKEWK+KFE+R+A+L +K +   R
Subjt:  ------GILHIPKYDTDEELKEWKTKFEDRIAILESKYKSWMR

AT4G17070.1 peptidyl-prolyl cis-trans isomerases

1.8e-19

67.86

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Query:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE
        ELWG AVKWG+DFK NSS  CC ACK MC    G C CDSWVFCG+ + CG KFGE
Subjt:  ELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGE

Sequences

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CDS sequence

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CCCAAACATACTAAATCGGAAGTCCAGGCCCATAACAAAACAACAACTGTCGTCGGTCAAAAAGTCAAGGCCATAACAAAACAAAAGTTGTCGCCGGTCAAAGAGTCAAG
GCCCATAACAAAACAACAGCTGTCGTCGGTCAAAGAGTCAAGGCCCATGACAAAACAACAGCTGTCGTCGGTCAAAGAGTCAAACCAAGGTGCTATATATAAACATTGCG
GCCACTGGCCATTGTTGAAAGAGCTCCGGCGATACCTTTCTCTGTTCGACGAAGCGAAGCGACGAACTGATACTTCAGTTCGTCTTGATGGCGGCGGCTTGTCAGTAATC
AGTGTTCGTGATATGTGTTCGCTTTACTGGAACACAACGAAGAGTGTTGCCGAGCTGTGGGGAGATGCTGTGAAATGGGGTTCTGATTTTAAGCTCAATTCGTCGAGGGA
GTGTTGTTTGGCTTGTAAAGCTATGTGTGATGATCAAAGTGGACGGTGTTTCTGTGATTCTTGGGTGTTCTGTGGTGATGCTAAGCCCTGCGGACCAAAGTTTGGTGAGG
GAATTATTCGCATGGAGACAGAGAATGGGCCTTTTCGCATAAAGGTTGGTTGTTTTCTTCATCTTCAAGCAGTTTTCTTTCATGACGCTGTCTCAGATTTATATACAAAG
GCATTGGAGGTCATAAAGAAGCTTCACAAGGATCAGGCTCATGAAATAAAGACTTACAAACTGAAGTTGGAGAATCTTCAAACTTTAAAAGATGCAGCATATAAGGTCCA
ACTGTCTGGGATCTTACACATCCCAAAGTACGACACTGATGAAGAATTGAAGGAATGGAAAACCAAGTTTGAAGATAGAATTGCTATTTTAGAGTCTAAGTATAAATCAT
GGATGCGAAGTGATTGGACCATGTTCTACCACCATTTTTGTGCAACGTCATTGGGCAACGGA

mRNA sequence

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Protein sequence

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PKHTKSEVQAHNKTTTVVGQKVKAITKQKLSPVKESRPITKQQLSSVKESRPMTKQQLSSVKESNQGAIYKHCGHWPLLKELRRYLSLFDEAKRRTDTSVRLDGGGLSVI
SVRDMCSLYWNTTKSVAELWGDAVKWGSDFKLNSSRECCLACKAMCDDQSGRCFCDSWVFCGDAKPCGPKFGEGIIRMETENGPFRIKVGCFLHLQAVFFHDAVSDLYTK
ALEVIKKLHKDQAHEIKTYKLKLENLQTLKDAAYKVQLSGILHIPKYDTDEELKEWKTKFEDRIAILESKYKSWMRSDWTMFYHHFCATSLGNG

Lsi05G018700 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome