; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G018920 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G018920
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Description10 kDa chaperonin
Genome locationchr05:26083105..26083922
RNA-Seq ExpressionLsi05G018920
SyntenyLsi05G018920
Gene Ontology termsGO:0051085 - chaperone cofactor-dependent protein refolding (biological process)
GO:0005759 - mitochondrial matrix (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051082 - unfolded protein binding (molecular function)
GO:0051087 - chaperone binding (molecular function)
InterPro domainsIPR011032 - GroES-like superfamily
IPR020818 - GroES chaperonin family
IPR037124 - GroES chaperonin superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028719.1 10 kDa chaperonin 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-4078.95Show/hide
Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLR-RGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTFVTVP PF +  +SSSVS+R+ I GTLR RG R S+LKVSA+SKKWEP KVVPQADRVL+RLEELP+KSAGGVLLPKSAVKFER+LVGEILS+G
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLR-RGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
        ++VGG+D+APGKKV
Subjt:  TDVGGNDIAPGKKV

XP_004133964.1 10 kDa chaperonin 1, chloroplastic [Cucumis sativus]4.8e-4184.21Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF TVP PF+N P++S SVS RRLI G    GLRSS LKVSAISKKWEPAKVVPQADRVLVRLEELP+KS GGVLLPKSAVKFERYLVG ILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
        T+VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

XP_008438275.1 PREDICTED: 10 kDa chaperonin isoform X1 [Cucumis melo]5.1e-4386.84Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG    GLRSSTLKVSAIS+KWEPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
         +VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

XP_016898890.1 PREDICTED: 10 kDa chaperonin isoform X2 [Cucumis melo]5.1e-4386.84Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG    GLRSSTLKVSAIS+KWEPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
         +VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

XP_038880425.1 10 kDa chaperonin 1, chloroplastic-like [Benincasa hispida]3.0e-4389.38Show/hide
Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGT
        MAMASTFVTVP   +NRP+S SVSARRLIIG    GLRSSTLKVSAISKK EPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVGT
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGT

Query:  DVGGNDIAPGKKV
        DVGGNDIAPGKKV
Subjt:  DVGGNDIAPGKKV

TrEMBL top hitse value%identityAlignment
A0A0A0L6L9 Uncharacterized protein2.3e-4184.21Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF TVP PF+N P++S SVS RRLI G    GLRSS LKVSAISKKWEPAKVVPQADRVLVRLEELP+KS GGVLLPKSAVKFERYLVG ILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
        T+VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

A0A1S3AWL8 10 kDa chaperonin isoform X12.5e-4386.84Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG    GLRSSTLKVSAIS+KWEPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
         +VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

A0A1S4DT59 10 kDa chaperonin isoform X22.5e-4386.84Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG    GLRSSTLKVSAIS+KWEPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
         +VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

A0A5D3CZW2 10 kDa chaperonin isoform X12.5e-4386.84Show/hide
Query:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MAMASTF+TVP PF+N P++S SVSARRLIIG    GLRSSTLKVSAIS+KWEPAKVVPQADRVLVRLEELP+KSAGGVLLPKSAVKFERYLVGEILSVG
Subjt:  MAMASTFVTVPNPFVNRPDSS-SVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
         +VGGNDIAPGKKV
Subjt:  TDVGGNDIAPGKKV

A0A6J1ICA1 10 kDa chaperonin 1, chloroplastic-like isoform X18.3e-3977.88Show/hide
Query:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGT
        MAMASTFVTVP PF +  +SSSVS+RRLI G    G R S+LKVSA+SKKWEP KVVPQADRVL+RLEELP+KSAGGVLLPKSAVKFER+LVGEILS+G+
Subjt:  MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGT

Query:  DVGGNDIAPGKKV
        +VGG+D+APGKKV
Subjt:  DVGGNDIAPGKKV

SwissProt top hitse value%identityAlignment
O80504 10 kDa chaperonin 2, chloroplastic7.0e-2760.53Show/hide
Query:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MASTFV ++PNPF   P  ++   +A   ++G+ RRG     L++ AIS KWEP KVVPQADRVLVRLE+LP KS+GGVLLPK+AVKFERYL GEI+SVG
Subjt:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
        ++V G  + PGK+V
Subjt:  TDVGGNDIAPGKKV

Q9M1C2 10 kDa chaperonin 1, chloroplastic4.4e-2962.16Show/hide
Query:  MASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGTDV
        MAS+F+TVP PF++ P     +A  L   TL  G+R ++ +++A+S KWEPAKVVPQADRVLVRLE LP+KS+GGVLLPKSAVKFERYL GE++SVG++V
Subjt:  MASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGTDV

Query:  GGNDIAPGKKV
        G  ++ PGKKV
Subjt:  GGNDIAPGKKV

Arabidopsis top hitse value%identityAlignment
AT2G44650.1 chloroplast chaperonin 105.0e-2860.53Show/hide
Query:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG
        MASTFV ++PNPF   P  ++   +A   ++G+ RRG     L++ AIS KWEP KVVPQADRVLVRLE+LP KS+GGVLLPK+AVKFERYL GEI+SVG
Subjt:  MASTFV-TVPNPFVNRPDSSSV--SARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVG

Query:  TDVGGNDIAPGKKV
        ++V G  + PGK+V
Subjt:  TDVGGNDIAPGKKV

AT3G60210.1 GroES-like family protein3.1e-3062.16Show/hide
Query:  MASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGTDV
        MAS+F+TVP PF++ P     +A  L   TL  G+R ++ +++A+S KWEPAKVVPQADRVLVRLE LP+KS+GGVLLPKSAVKFERYL GE++SVG++V
Subjt:  MASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGTDV

Query:  GGNDIAPGKKV
        G  ++ PGKKV
Subjt:  GGNDIAPGKKV

AT5G20720.1 chaperonin 205.0e-0436.96Show/hide
Query:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI
        +SSV    L  GTLR+   R   +K  S ++ K+   K  P  DRVLV+++E  +K+ GG+LLP +A    +   GE+++V  G  +G N I
Subjt:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI

AT5G20720.2 chaperonin 205.0e-0436.96Show/hide
Query:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI
        +SSV    L  GTLR+   R   +K  S ++ K+   K  P  DRVLV+++E  +K+ GG+LLP +A    +   GE+++V  G  +G N I
Subjt:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI

AT5G20720.3 chaperonin 205.0e-0436.96Show/hide
Query:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI
        +SSV    L  GTLR+   R   +K  S ++ K+   K  P  DRVLV+++E  +K+ GG+LLP +A    +   GE+++V  G  +G N I
Subjt:  SSSVSARRLIIGTLRRG-LRSSTLK-VSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSV--GTDVGGNDI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAATCCCTTTGTCAACAGGCCTGATTCATCTTCCGTATCTGCACGGCGACTAATAATCGGTACGCTGAGAAGAGGATT
GCGAAGTAGCACTTTAAAAGTCAGCGCAATTTCTAAGAAATGGGAGCCTGCGAAGGTGGTTCCTCAAGCTGATAGAGTTCTCGTCCGTCTTGAGGAGCTTCCTCAGAAAT
CAGCTGGTGGAGTTTTGCTGCCTAAATCAGCTGTCAAATTTGAGCGATATCTTGTGGGAGAAATTCTATCCGTTGGAACAGATGTTGGAGGAAACGATATTGCACCTGGA
AAGAAGGTAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATGGCGTCTACGTTCGTCACAGTGCCAAATCCCTTTGTCAACAGGCCTGATTCATCTTCCGTATCTGCACGGCGACTAATAATCGGTACGCTGAGAAGAGGATT
GCGAAGTAGCACTTTAAAAGTCAGCGCAATTTCTAAGAAATGGGAGCCTGCGAAGGTGGTTCCTCAAGCTGATAGAGTTCTCGTCCGTCTTGAGGAGCTTCCTCAGAAAT
CAGCTGGTGGAGTTTTGCTGCCTAAATCAGCTGTCAAATTTGAGCGATATCTTGTGGGAGAAATTCTATCCGTTGGAACAGATGTTGGAGGAAACGATATTGCACCTGGA
AAGAAGGTAACTTAG
Protein sequenceShow/hide protein sequence
MAMASTFVTVPNPFVNRPDSSSVSARRLIIGTLRRGLRSSTLKVSAISKKWEPAKVVPQADRVLVRLEELPQKSAGGVLLPKSAVKFERYLVGEILSVGTDVGGNDIAPG
KKVT