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Lsi05G019280 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G019280
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionEF-hand domain-containing protein
Genome locationchr05:26474514..26478307
RNA-Seq ExpressionLsi05G019280
SyntenyLsi05G019280
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
GO:0048306 - calcium-dependent protein binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK17497.1 uncharacterized protein E5676_scaffold434G003620 [Cucumis melo var. makuwa]4.6e-1867.03Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        SD N++Q IDRDEFL F+  LT E+  SVSQRL  ++TLVVAPT+A+VTK+STEG+P +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

XP_004133938.1 uncharacterized protein LOC101219769 [Cucumis sativus]1.6e-1868.89Show/hide
Query:  DMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        D N++  IDR+EFL F+  LTSE+F SVSQRL  ++TLVVAPT+A+VTKKSTEGVP +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  DMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

XP_008438214.1 PREDICTED: uncharacterized protein LOC103483388 [Cucumis melo]3.5e-1867.03Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        SD N++Q IDRDEFL F+  LT E+  SVSQRL  ++TLVVAPT+A+VTK+STEG+P +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

XP_038876686.1 uncharacterized protein LOC120069050 [Benincasa hispida]6.8e-2273.33Show/hide
Query:  NSDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQLL
        +SD ++D+ IDR+EFL F+LSLTS+TF SVSQRL  +LTLVVAPTVA+VTKKSTEGVP +GK+VQKL  SAYA LVTLAAL+FQ SQQ L
Subjt:  NSDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQLL

XP_038892374.1 uncharacterized protein LOC120081499 [Benincasa hispida]3.2e-2785.39Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQLL
        SDMN DQYIDR EFLHF+LSLTSETFKSVSQRLSI LTLVVAPTVA+VTKKSTE +P +GK VQKL VSAYA LVTLAALIFQKSQQ L
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQLL

TrEMBL top hitse value%identityAlignment
A0A0A0L6I0 EF-hand domain-containing protein7.6e-1968.89Show/hide
Query:  DMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        D N++  IDR+EFL F+  LTSE+F SVSQRL  ++TLVVAPT+A+VTKKSTEGVP +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  DMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

A0A1S3AVI1 uncharacterized protein LOC1034833881.7e-1867.03Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        SD N++Q IDRDEFL F+  LT E+  SVSQRL  ++TLVVAPT+A+VTK+STEG+P +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

A0A5A7U485 EF-hand domain-containing protein2.2e-1867.03Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        SD N++Q IDRDEFL F+  LT E+  SVSQRL  ++TLVVAPT+A+VTK+STEG+P +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

A0A5D3D0J2 EF-hand domain-containing protein2.2e-1867.03Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK
        SD N++Q IDRDEFL F+  LT E+  SVSQRL  ++TLVVAPT+A+VTK+STEG+P +GK VQK+  SAYA+LVTLAAL+FQ S QQLLK
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKS-QQLLK

A0A6J1EC16 uncharacterized protein LOC1114318344.9e-1865.52Show/hide
Query:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQ
        +D N+D+ I RDEFL F+LSLTS+ F S+S RL  +LTLV+APTVA+VTK+STEG+P IG  VQKL  SAYA LVTLAA +FQ SQ+
Subjt:  SDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64850.1 Calcium-binding EF hand family protein7.8e-1652.94Show/hide
Query:  NLHVNSDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAAL
        ++  + D+N D  +DR+EF+ F+  +T+ETF  VSQ   +++ L+VAPTVAI TKK+TEGVP +GK VQKL  S YA LVTLA +
Subjt:  NLHVNSDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPTVAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGATAAGCTGCCGGTTGATGGTCTGTACACTGCTACGTTACTTGTATACAATGAAATTAATAAGTTGTTCCCCGGACCGCATCATGATCCTCCCTCGACGGAACGT
GTCTATGAAGGTGTCCAAGAACTTAGAAAACTCAGAGAACTCATACAGTGAAATTGGCTGGAGTATGGCTGTCAACTTGCATGTGAACAGCGATATGAACAAGGACCAAT
ATATTGACCGTGACGAATTCTTGCATTTCATGTTGAGTTTGACATCTGAGACGTTCAAATCAGTGAGCCAGAGATTGTCAATCCTCCTCACTTTGGTGGTAGCACCAACC
GTTGCAATAGTCACAAAGAAAAGTACTGAAGGAGTTCCAGCCATTGGAAAATATGTGCAAAAGCTTTCCGTTTCAGCTTATGCTGTTCTCGTCACCCTTGCTGCTCTCAT
CTTTCAAAAATCTCAGCAGCTTCTTAAATGA
mRNA sequenceShow/hide mRNA sequence
GGTCGCTTTATTCCATGTTTCCTCTCCAACAGGAAAAGAAAATGTGTGGCAGAAGCAGAATAGTTTCTGAATTTCATCTTTTTTCTAATACAAAACCTCTGGAAATGTTA
AATTTCCGCTATCGTTGCTGCTACGGCGGACATCTCAATCTTCCTTTGCCCGTAGCGCCGATTTCAATTACAGTCGGAGGCTGCTTTGAGAGGTCTGTGATCTCCAATCA
CCGTCGGCGCCGTTTAGCATGGGACAAGCATTGTGGAAATTCGCAGTCAAAGACTGGAAGGATAAGCAACTGAGGAAGATAACAGATAGAATATTTGATAAGTTACAAAA
TAAAACACATGGGGATAAGCTGCCGGTTGATGGTCTGTACACTGCTACGTTACTTGTATACAATGAAATTAATAAGTTGTTCCCCGGACCGCATCATGATCCTCCCTCGA
CGGAACGTGTCTATGAAGGTGTCCAAGAACTTAGAAAACTCAGAGAACTCATACAGTGAAATTGGCTGGAGTATGGCTGTCAACTTGCATGTGAACAGCGATATGAACAA
GGACCAATATATTGACCGTGACGAATTCTTGCATTTCATGTTGAGTTTGACATCTGAGACGTTCAAATCAGTGAGCCAGAGATTGTCAATCCTCCTCACTTTGGTGGTAG
CACCAACCGTTGCAATAGTCACAAAGAAAAGTACTGAAGGAGTTCCAGCCATTGGAAAATATGTGCAAAAGCTTTCCGTTTCAGCTTATGCTGTTCTCGTCACCCTTGCT
GCTCTCATCTTTCAAAAATCTCAGCAGCTTCTTAAATGATAAGTTCAGTCTCTGTTTCATTCGTTCTATCTATATATTCCTTTGTTATTTACATATATATGTGATTGTGA
ACTAATTAATTCTCGAACTTTGAGTTTAATATTTGAAGCCTTGGTTGT
Protein sequenceShow/hide protein sequence
MGISCRLMVCTLLRYLYTMKLISCSPDRIMILPRRNVSMKVSKNLENSENSYSEIGWSMAVNLHVNSDMNKDQYIDRDEFLHFMLSLTSETFKSVSQRLSILLTLVVAPT
VAIVTKKSTEGVPAIGKYVQKLSVSAYAVLVTLAALIFQKSQQLLK