; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G019330 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G019330
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionB3 domain-containing protein
Genome locationchr05:26499449..26502162
RNA-Seq ExpressionLsi05G019330
SyntenyLsi05G019330
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR003340 - B3 DNA binding domain
IPR015300 - DNA-binding pseudobarrel domain superfamily
IPR044837 - B3 domain-containing protein REM16-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650806.1 B3 domain-containing protein Os04g0386900 [Cucumis sativus]1.5e-6288.06Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQNGET+PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIPAVL  RGKKWKIDY+GNRRGKALD+KQWRKFVNDN LK+GDA VFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQIL GDIP +LHDKFSGETK+TPI+L+
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_022941967.1 B3 domain-containing protein Os04g0386900-like [Cucurbita moschata]2.4e-6081.34Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY  GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_022974195.1 B3 domain-containing protein Os04g0386900-like [Cucurbita maxima]1.4e-6082.09Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY  GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S+LKFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_023539026.1 B3 domain-containing protein Os04g0386900-like [Cucurbita pepo subsp. pepo]4.2e-6080.6Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ +PAKFHS+LPAI+IPAVLY  GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

XP_038903804.1 B3 domain-containing protein Os04g0386900-like [Benincasa hispida]4.6e-6793.28Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQ+GE LPLSGKPYHAFILSKSHVAPIC+LVLPAKFHSILPAIVIPAVL+ +GKKW IDYYGNRRGKALDTKQWRKFVNDN LK+GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

TrEMBL top hitse value%identityAlignment
A0A0A0L3V3 TF-B3 domain-containing protein7.4e-6388.06Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEPQNGET+PLSGKPYHAFILSKSHVAPI NLVLPAKFHSILPAIVIPAVL  RGKKWKIDY+GNRRGKALD+KQWRKFVNDN LK+GDA VFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        SILKFRVQIL GDIP +LHDKFSGETK+TPI+L+
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1CYN6 B3 domain-containing protein Os04g0386900-like6.1e-4969.4Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEP+  E  PLS KP+H  IL KSHVAP   + LPAKFHS+LPAIVI  V+Y  GK+W++DYYGNRRG+ LDT+ WRKFV++N LK GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIP QLHDKF GE++DTPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1D033 B3 domain-containing protein Os04g0386900-like9.7e-5576.87Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        MEP+N E  PLS KP+H  IL+KSHVAPI N+ LPAKFHS+LPAIVI  VLY  GK+W +DYYGNRRGK+LDT+ WRKFVNDN LK+GDACVFELMECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S LKFRVQILRGDIP QLHDKFSGE+KDTPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1FTK2 B3 domain-containing protein Os04g0386900-like1.2e-6081.34Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY  GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S++KFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

A0A6J1IDC2 B3 domain-containing protein Os04g0386900-like6.9e-6182.09Show/hide
Query:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS
        M+PQN   LPLSGKPYH  ILSKSHVAPICN+ LPAKFHS+LPAI+IPAVLY  GKKWKIDYYGNRRGKALDTKQWRKFVNDN LK GDACVFEL+ECSS
Subjt:  MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSS

Query:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE
        S+LKFRVQILRGDIPF+LH+KFSGE+++TPI ++
Subjt:  SILKFRVQILRGDIPFQLHDKFSGETKDTPIYLE

SwissProt top hitse value%identityAlignment
Q2QMT5 B3 domain-containing protein LOC_Os12g400902.0e-0429.21Show/hide
Query:  GKPYHAFILSKSHVAPICNLVLPAKF---HSILPAIVIPAVLYFRGKKWKIDYYG-NRRGKALDTKQWRKFVNDNLLKAGDACVFELME
        G P    +L  +HV     L++P +F   H    +  I  +   R +KW + YY  +   +  +  +W KF+ +N L+ G+ C+FELM+
Subjt:  GKPYHAFILSKSHVAPICNLVLPAKF---HSILPAIVIPAVLYFRGKKWKIDYYG-NRRGKALDTKQWRKFVNDNLLKAGDACVFELME

Q7XLP4 B3 domain-containing protein Os04g03869001.1e-2041.09Show/hide
Query:  LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELM---ECSSSILKF
        LPL GKPY   I+ KSHV P   +V+P  F  +LP+   PA L +RG+ W + + G R  + L+   WR F  DN L+ GD CVFEL+         ++F
Subjt:  LPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELM---ECSSSILKF

Query:  RVQILRGDIPFQLHDKFSGETKDTPIYLE
        RVQ+LR +IP ++  +  G T  TPI ++
Subjt:  RVQILRGDIPFQLHDKFSGETKDTPIYLE

Q8RYD1 B3 domain-containing protein REM163.0e-0532.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD

Q9LHY9 B3 domain-containing protein Os06g01123005.5e-1539.23Show/hide
Query:  TLPL-SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMEC-SSSIL
        T PL +G P+   +++KSH+ P   + +P +F   L  P     AVL+  GK W   Y G+ + K LD   W +F  DN L  GDACVFEL+   ++  L
Subjt:  TLPL-SGKPYHAFILSKSHVAPICNLVLPAKFHSIL--PAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMEC-SSSIL

Query:  KFRVQILRGDIPFQLHDKFSGETKDTPIYL
        +F+VQILRG +P ++     G T D PI +
Subjt:  KFRVQILRGDIPFQLHDKFSGETKDTPIYL

Arabidopsis top hitse value%identityAlignment
AT4G33280.1 AP2/B3-like transcriptional factor family protein2.2e-0632.99Show/hide
Query:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD
        + +SHV   C L +P K+  +   ++     V+     KW  K + +G R    + T  W+KFV DN L+ GD CVFE     +  L   V I RG+
Subjt:  LSKSHVAPICNLVLPAKFHSILPAIVI--PAVLYFRGKKW--KIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQILRGD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCGCAAAATGGAGAAACTTTGCCACTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCATGTCGCTCCCATATGTAATTTGGTTTTGCCAGCTAA
ATTCCATTCTATTTTACCTGCTATTGTGATCCCTGCGGTTCTTTACTTTCGAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAA
AACAGTGGAGGAAGTTTGTTAATGATAATCTTCTCAAGGCTGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGTAGCAGCATACTTAAATTTAGAGTTCAAATTCTC
AGAGGTGACATCCCTTTCCAACTGCACGACAAGTTCAGTGGGGAGACAAAAGACACCCCCATATACCTTGAGTAA
mRNA sequenceShow/hide mRNA sequence
TTAAATTTCAACCTTTTGAAACTTGAGAAGAAGAAAAAAAAGAAAAAGAAAAAACGAGGACCGAGTGTCTCACCATCTGCTTGCTTCGAGCTCACAGAGCTTCCAACAAT
GGAGCCGCAAAATGGAGAAACTTTGCCACTTTCAGGCAAACCCTACCATGCTTTTATTCTTTCTAAATCGCATGTCGCTCCCATATGTAATTTGGTTTTGCCAGCTAAAT
TCCATTCTATTTTACCTGCTATTGTGATCCCTGCGGTTCTTTACTTTCGAGGCAAGAAATGGAAGATAGATTATTATGGGAACCGACGCGGTAAGGCACTTGATACAAAA
CAGTGGAGGAAGTTTGTTAATGATAATCTTCTCAAGGCTGGAGATGCTTGTGTATTTGAGCTCATGGAATGTAGTAGCAGCATACTTAAATTTAGAGTTCAAATTCTCAG
AGGTGACATCCCTTTCCAACTGCACGACAAGTTCAGTGGGGAGACAAAAGACACCCCCATATACCTTGAGTAACTTCCCTTTCTGTGGTTCCTTAGTTTTCAAAAGTTCC
GACTTGTCGACATCATATGTGGTTCTACAATCAGACAACCCATTTGATATTTGTAAGTAGATATGTGTTAGACCACCAACATTGATCACATATGTCAGGAAAAAAATAAG
AAAGGGAAGGAGGTGGTTAAGGAAGGGGAAGCATCAACCAGTAGTTGAAGAATTAAGTTATTATTAGTTATTTTATACAGTTGTTTAGTTATATATACGTTTGTGTGTGT
TGTTGGTTTTTATCTGGTTTTTATGTATTAGGAGGAACTTTCTCTCTAGAAAAGGGAGATTGTGGATGGATGTATCTTTTACTTGCTTTCTTTTAAAGTTATAATAAAGA
TCTTGATAGGGATACCTATCAATATGTAATCCTGTTTTTATTATCTCAGGAATGTATAAGTGAAAAAGTTTTTCCAGATTTCATGGTTCTTTTAAAAAATTAATTAATTA
ATTATTTTTTTCATTCTGT
Protein sequenceShow/hide protein sequence
MEPQNGETLPLSGKPYHAFILSKSHVAPICNLVLPAKFHSILPAIVIPAVLYFRGKKWKIDYYGNRRGKALDTKQWRKFVNDNLLKAGDACVFELMECSSSILKFRVQIL
RGDIPFQLHDKFSGETKDTPIYLE