; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lsi05G019410 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G019410
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
DescriptionChromo domain protein LHP1-like
Genome locationchr05:26575961..26580290
RNA-Seq ExpressionLsi05G019410
SyntenyLsi05G019410
Gene Ontology termsGO:0006325 - chromatin organization (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049056.1 chromo domain protein LHP1-like [Cucumis melo var. makuwa]3.4e-4590.91Show/hide
Query:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG
        +IMGYTT+GPSPVVPCIIVGFLG+IIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH SSTFAVQHSSSP YDADGFGFGSGALFLG
Subjt:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG

Query:  LLFLVLYNLL
        LLFLVLY LL
Subjt:  LLFLVLYNLL

KAB8081163.1 hypothetical protein EE612_002112, partial [Oryza sativa]1.7e-2041.14Show/hide
Query:  KITAPLHPPGRTDESSDRRFHNNR----------------LDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFIG-RIAGDDVAILDYDGGVAEDEI
        ++ APL PPG  D++ + R H +R                LD  E  GG   A++DGD+GVL+ +   L G     +G R A  +VA L+ DGGVAEDE+
Subjt:  KITAPLHPPGRTDESSDRRFHNNR----------------LDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFIG-RIAGDDVAILDYDGGVAEDEI

Query:  DGAVNVALFVELAFGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPINGCDFTDAHN
        DGAV+VAL  ELA GV+VE VL A EAA V+  ++G  ++R+RLV+ R+G V +  V+  E V  + C     +N
Subjt:  DGAVNVALFVELAFGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPINGCDFTDAHN

KAG6582549.1 hypothetical protein SDJN03_22551, partial [Cucurbita argyrosperma subsp. sororia]4.0e-2261.11Show/hide
Query:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLGLL
        MG+ TAGPSP+VPCIIVGFLGMIIFWPTL SIWESVESLLEL                                V H+S+P YD+DGFGFGSG LFLGLL
Subjt:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLGLL

Query:  FLVLYNLL
        FLVLYNLL
Subjt:  FLVLYNLL

KGN56618.1 hypothetical protein Csa_011306 [Cucumis sativus]1.6e-4290.83Show/hide
Query:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHV-SSTFAVQHSSSPCYDADGFGFGSGALFLGL
        MGY TAGPSPVVPCIIVGFLGMIIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH  SSTFAVQHSSSP YDADGFGFGSGAL LGL
Subjt:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHV-SSTFAVQHSSSPCYDADGFGFGSGALFLGL

Query:  LFLVLYNLL
        LFLVLY LL
Subjt:  LFLVLYNLL

TYK17507.1 chromo domain protein LHP1-like [Cucumis melo var. makuwa]3.4e-4590.91Show/hide
Query:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG
        +IMGYTT+GPSPVVPCIIVGFLG+IIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH SSTFAVQHSSSP YDADGFGFGSGALFLG
Subjt:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG

Query:  LLFLVLYNLL
        LLFLVLY LL
Subjt:  LLFLVLYNLL

TrEMBL top hitse value%identityAlignment
A0A0A0L4E9 Uncharacterized protein7.6e-4390.83Show/hide
Query:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHV-SSTFAVQHSSSPCYDADGFGFGSGALFLGL
        MGY TAGPSPVVPCIIVGFLGMIIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH  SSTFAVQHSSSP YDADGFGFGSGAL LGL
Subjt:  MGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHV-SSTFAVQHSSSPCYDADGFGFGSGALFLGL

Query:  LFLVLYNLL
        LFLVLY LL
Subjt:  LFLVLYNLL

A0A0P0V1P5 Os01g0312600 protein (Fragment)8.2e-2141.14Show/hide
Query:  KITAPLHPPGRTDESSDRRFHNNR----------------LDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFIG-RIAGDDVAILDYDGGVAEDEI
        ++ APL PPG  D++ + R H +R                LD  E  GG   A++DGD+GVL+ +   L G     +G R A  +VA L+ DGGVAEDE+
Subjt:  KITAPLHPPGRTDESSDRRFHNNR----------------LDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFIG-RIAGDDVAILDYDGGVAEDEI

Query:  DGAVNVALFVELAFGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPINGCDFTDAHN
        DGAV+VAL  ELA GV+VE VL A EAA V+  ++G  ++R+RLV+ R+G V +  V+  E V  + C     +N
Subjt:  DGAVNVALFVELAFGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPINGCDFTDAHN

A0A5A7U472 Chromo domain protein LHP1-like1.6e-4590.91Show/hide
Query:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG
        +IMGYTT+GPSPVVPCIIVGFLG+IIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH SSTFAVQHSSSP YDADGFGFGSGALFLG
Subjt:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG

Query:  LLFLVLYNLL
        LLFLVLY LL
Subjt:  LLFLVLYNLL

A0A5D3D0R0 Chromo domain protein LHP1-like1.6e-4590.91Show/hide
Query:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG
        +IMGYTT+GPSPVVPCIIVGFLG+IIFWPTL SIWES+E LLELGIWVAVILLFLLLLVH LSIFFPVLH SSTFAVQHSSSP YDADGFGFGSGALFLG
Subjt:  EIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFAVQHSSSPCYDADGFGFGSGALFLG

Query:  LLFLVLYNLL
        LLFLVLY LL
Subjt:  LLFLVLYNLL

A0A7I8KU89 Hypothetical protein3.1e-2048.05Show/hide
Query:  GKITAPLHPPGRTDESSDRRFHNNRLDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFI---GRIAGDDVAILDYDGGVAEDEIDGAVNVALFVELA
        G+  APL PP R+DE        +RL        R   IVDGD+GVL+ + +AL    DG +    R+   DVA+L+   GVAE+E+DGAV+VA+ VELA
Subjt:  GKITAPLHPPGRTDESSDRRFHNNRLDAAEAAGGRDSAIVDGDSGVLIRIGAALGGECDGFI---GRIAGDDVAILDYDGGVAEDEIDGAVNVALFVELA

Query:  FGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPING
         GV+VE VL A EAAAV+DGE+   +ERYRLV+ R   V EG V R+E V  +G
Subjt:  FGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEGYVSRNESVPING

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAGGGTCAAGCTTTTCCAAAGTCACTCCTACCATCAACAAACAGCCTTTTCCCCCTCAATTTTACTCTTTTGCAACCCATGTTCTGATTCAGAGAGAGAGATAAT
GGGATATACTACTGCAGGACCATCACCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCAACTCTTCAATCCATCTGGGAGAGTGTAGAGT
CTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTGCTTTCTATTTTCTTTCCTGTTCTTCACGTTTCATCCACTTTTGCA
GTTCAGCATTCCAGCAGCCCTTGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGTTTCTAGGTCTTCTCTTCCTTGTCCTCTATAATCTGTTGATTTTGCA
TTTAAATGGACTAAAGCAGAGGAAAACTAAACCAAATCAGAGGCCGGAGGTGAAAGGCACGCCGGTACTCGGCAACCAAGATCCACCGGCGATGAAATTCCCGACGGTGA
ACTTCGAAGCCTCCGCCGCACTAGGCAAAATTACCGCTCCACTCCATCCACCCGGCCGGACTGATGAATCCTCCGATCGACGATTTCATAACAACCGCCTTGACGCCGCT
GAGGCCGCCGGCGGACGTGATTCTGCAATTGTGGATGGAGATTCCGGTGTTCTGATTCGGATCGGAGCGGCCTTGGGCGGTGAGTGTGATGGTTTTATTGGGAGGATCGC
GGGCGATGATGTTGCAATCTTGGATTACGACGGCGGCGTTGCCGAAGATGAAATCGACGGTGCCGTAAATGTCGCATTGTTTGTAGAATTGGCGTTCGGCGTAAACGTAG
AGAGTGTCTTGAAAGCCTTCGAAGCCGCAGCGGTAAAAGACGGAGAGATCGGAACCCGATCGGAGCGCTACCGCCTGGTGGTTCTTCGCTCCGGCAGTGTTTCTGAAGGT
TATGTCTCGCGCAATGAATCCGTCCCCATCAACGGCTGTGATTTCACCGACGCCCACAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAGGGTCAAGCTTTTCCAAAGTCACTCCTACCATCAACAAACAGCCTTTTCCCCCTCAATTTTACTCTTTTGCAACCCATGTTCTGATTCAGAGAGAGAGATAAT
GGGATATACTACTGCAGGACCATCACCTGTTGTACCTTGTATCATAGTTGGATTTCTGGGGATGATAATATTTTGGCCAACTCTTCAATCCATCTGGGAGAGTGTAGAGT
CTCTACTTGAACTGGGCATTTGGGTTGCAGTGATTCTTCTTTTCCTCTTACTGCTTGTACACTTGCTTTCTATTTTCTTTCCTGTTCTTCACGTTTCATCCACTTTTGCA
GTTCAGCATTCCAGCAGCCCTTGCTACGATGCTGATGGATTCGGTTTCGGGTCAGGAGCATTGTTTCTAGGTCTTCTCTTCCTTGTCCTCTATAATCTGTTGATTTTGCA
TTTAAATGGACTAAAGCAGAGGAAAACTAAACCAAATCAGAGGCCGGAGGTGAAAGGCACGCCGGTACTCGGCAACCAAGATCCACCGGCGATGAAATTCCCGACGGTGA
ACTTCGAAGCCTCCGCCGCACTAGGCAAAATTACCGCTCCACTCCATCCACCCGGCCGGACTGATGAATCCTCCGATCGACGATTTCATAACAACCGCCTTGACGCCGCT
GAGGCCGCCGGCGGACGTGATTCTGCAATTGTGGATGGAGATTCCGGTGTTCTGATTCGGATCGGAGCGGCCTTGGGCGGTGAGTGTGATGGTTTTATTGGGAGGATCGC
GGGCGATGATGTTGCAATCTTGGATTACGACGGCGGCGTTGCCGAAGATGAAATCGACGGTGCCGTAAATGTCGCATTGTTTGTAGAATTGGCGTTCGGCGTAAACGTAG
AGAGTGTCTTGAAAGCCTTCGAAGCCGCAGCGGTAAAAGACGGAGAGATCGGAACCCGATCGGAGCGCTACCGCCTGGTGGTTCTTCGCTCCGGCAGTGTTTCTGAAGGT
TATGTCTCGCGCAATGAATCCGTCCCCATCAACGGCTGTGATTTCACCGACGCCCACAATTAA
Protein sequenceShow/hide protein sequence
MERVKLFQSHSYHQQTAFSPSILLFCNPCSDSEREIMGYTTAGPSPVVPCIIVGFLGMIIFWPTLQSIWESVESLLELGIWVAVILLFLLLLVHLLSIFFPVLHVSSTFA
VQHSSSPCYDADGFGFGSGALFLGLLFLVLYNLLILHLNGLKQRKTKPNQRPEVKGTPVLGNQDPPAMKFPTVNFEASAALGKITAPLHPPGRTDESSDRRFHNNRLDAA
EAAGGRDSAIVDGDSGVLIRIGAALGGECDGFIGRIAGDDVAILDYDGGVAEDEIDGAVNVALFVELAFGVNVESVLKAFEAAAVKDGEIGTRSERYRLVVLRSGSVSEG
YVSRNESVPINGCDFTDAHN