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Lsi05G019900 (gene) of Bottle gourd (USVL1VR-Ls) v1 genome

Gene IDLsi05G019900
OrganismLagenaria siceraria USVL1VR-Ls (Bottle gourd (USVL1VR-Ls) v1)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationchr05:26976962..26980186
RNA-Seq ExpressionLsi05G019900
SyntenyLsi05G019900
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049010.1 histone deacetylase complex subunit SAP18 [Cucumis melo var. makuwa]1.1e-3897.62Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV

XP_022943948.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]3.0e-3994.32Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

XP_022974173.1 histone deacetylase complex subunit SAP18-like [Cucurbita maxima]3.0e-3994.32Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

XP_023538738.1 histone deacetylase complex subunit SAP18 [Cucurbita pepo subsp. pepo]3.0e-3994.32Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]1.1e-3893.18Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

TrEMBL top hitse value%identityAlignment
A0A1S3AVL4 histone deacetylase complex subunit SAP181.2e-3893.18Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

A0A5A7U0S8 Histone deacetylase complex subunit SAP185.4e-3997.62Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVV

A0A5D3D2K7 Histone deacetylase complex subunit SAP181.2e-3893.18Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRA HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

A0A6J1FXI8 histone deacetylase complex subunit SAP18-like1.4e-3994.32Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like1.4e-3994.32Show/hide
Query:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        MAGEAEAPRRAYGA PRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV  + P
Subjt:  MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP182.2e-1359.02Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + P
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

O55128 Histone deacetylase complex subunit SAP182.2e-1359.02Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + P
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

O64644 Histone deacetylase complex subunit SAP186.0e-2771.76Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLV
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV

Q3T022 Histone deacetylase complex subunit SAP182.2e-1359.02Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + P
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

Q5RDT5 Histone deacetylase complex subunit SAP182.2e-1359.02Show/hide
Query:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LV  + P
Subjt:  EPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIP

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P184.3e-2871.76Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLV
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV

AT2G45640.2 SIN3 associated polypeptide P184.3e-2871.76Show/hide
Query:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV
        AEA RR  G  P  P        PPRP+ EPVDREKTCPLLLRVFTK G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLV
Subjt:  AEAPRRAYGALPRAP------HAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGCGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGACGAGGTTCAAATTTATACCTGGAAAGATG
CTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGA
mRNA sequenceShow/hide mRNA sequence
TGAGACTTGAAGAATACTGAGAGAGAGAAATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGCTCTTCCAAGAGCCCCTCATGCTCCTCCTCGTCCTCGTTTG
GAGCCCGTTGATCGCGAAAAGACTTGTCCTTTGCTGCTTCGTGTTTTTACGAAGATTGGGAGTCACCATTTCAACGAAGATTTTGCTGTGAGAGGCAAGGAGCCGAGGGA
CGAGGTTCAAATTTATACCTGGAAAGATGCTACTCTTCGCGAGCTAACTGATCTGGTTGTATTTCTCATTCCTTTTCAACCTCTTCTCCCTCCACGGTTTGCATGACATA
AATACCAATGATCTGTATCTTTTTGATTTATATCCATGATGCGTTCATAGACACTATTTCCCTTCCATTGCCCCTTGAACTTATGTGTCTGTACTTTTTTCTTCCCCTTT
GGGTGGGGGAGCTTACAGGTCAAAGAGGTAGCTCCGGAAGCCAGGAGGAGAAATGCTAAACTTTCCTTCGCTTTGGTTTATCCTGATAGACATGGCCGGTTTGTATTGAG
AGAGGTGGGGAAGACATTCTCGTTTGGAAATGGACGATTAGACGATAGCTTGGCTTTGGCAGAACTCGGTTTTCAGATCGGAGATTACTTGGATGTGGCAATTATATAGG
GTCTGTGGTGCCTTTATATCCTAAATTCCTAATAATACCTATATCAACCGGAAAAGGTATCGGGATTTCTTTCTCCAGTGAAGAACCAAACAAATGAGGATATTAGCTTC
AATCTTGTAATGTATATTCCATTTAAGAATTGGTTGAAAATCCTTTACTTTTTTTTGTCTTGGGCCCTATTAGGTAGATCATGATAGTCATCAATCGTCATGTTCATTTG
AGTTACCTTCTTGTTGTATTGCATTGCATGAAGCAGGCCTTAGGATAGAGTTTTCATTAGGACGATAATGGTGGAACTATTTTGGGCCTTTATCTTAATATCAGCTTTTC
GTTTTTAAAATTTAAGTCTGTTAGTTTTAACTTGCTAAGTCATTATATAAGTTACCACATGTTGAACTATATATATATATATGATCCAAAAACGCTATTTTACTTTTTTG
TAATTCTCAAAATGTTAATTTGTTTAATTCTCAACTTTAATTTGATGC
Protein sequenceShow/hide protein sequence
MAGEAEAPRRAYGALPRAPHAPPRPRLEPVDREKTCPLLLRVFTKIGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVVFLIPFQPLLPPRFA